[PRE REVIEW]: IRXCT: Iterative Reconstruction and visualization application for X-ray Computed Tomography

[whedon]

Submitting author: @dntrinca (D Narcis Trinca) Repository: https://github.com/dntrinca/IRXCT Version: 1.0 Editor: @usethedata Reviewer: Pending

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Thanks for submitting your paper to JOSS @dntrinca. Currently, there isn't an JOSS editor assigned to your paper.

@dntrinca if you have any suggestions for potential reviewers then please mention them here in this thread. In addition, this list of people have already agreed to review for JOSS and may be suitable for this submission.

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[whedon]

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For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:

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[whedon]

Attempting PDF compilation. Reticulating splines etc...

[whedon]

PDF failed to compile for issue #1588 with the following error:

Can't find any papers to compile :-(

[danielskatz]

@dntrinca - this submission has some problems - the source code being in a zip file is one. We expect to see the software in a version control repository (eg github) but in a way that the software can be updated via pull requests and changes - a zip file doesn't really work for that.

[danielskatz]

@whedon generate pdf

[whedon]

Attempting PDF compilation. Reticulating splines etc...

[whedon]

PDF failed to compile for issue #1588 with the following error:

/app/vendor/bundle/ruby/2.4.0/bundler/gems/whedon-5a9319b684e6/lib/whedon.rb:115:in check_fields': Paper YAML header is missing expected fields: affiliations (RuntimeError) from /app/vendor/bundle/ruby/2.4.0/bundler/gems/whedon-5a9319b684e6/lib/whedon.rb:80:ininitialize' from /app/vendor/bundle/ruby/2.4.0/bundler/gems/whedon-5a9319b684e6/lib/whedon/processor.rb:36:in new' from /app/vendor/bundle/ruby/2.4.0/bundler/gems/whedon-5a9319b684e6/lib/whedon/processor.rb:36:inset_paper' from /app/vendor/bundle/ruby/2.4.0/bundler/gems/whedon-5a9319b684e6/bin/whedon:55:in prepare' from /app/vendor/bundle/ruby/2.4.0/gems/thor-0.20.3/lib/thor/command.rb:27:inrun' from /app/vendor/bundle/ruby/2.4.0/gems/thor-0.20.3/lib/thor/invocation.rb:126:in invoke_command' from /app/vendor/bundle/ruby/2.4.0/gems/thor-0.20.3/lib/thor.rb:387:indispatch' from /app/vendor/bundle/ruby/2.4.0/gems/thor-0.20.3/lib/thor/base.rb:466:in start' from /app/vendor/bundle/ruby/2.4.0/bundler/gems/whedon-5a9319b684e6/bin/whedon:116:in<top (required)>' from /app/vendor/bundle/ruby/2.4.0/bin/whedon:23:in load' from /app/vendor/bundle/ruby/2.4.0/bin/whedon:23:in

'

[danielskatz]

Also, please follow the example paper to use affiliations correctly - they need to be marked as integer indexes in the authors section, then these indexes need to be used in the affiliations section.

Once you have made changes, please feel free to enter @whedon generate pdf here as a new comment in this issue to try to build the paper again.

[ghost]

Dear Daniel Skatz,

I just made the necessary corrections you have mentioned.

Best, D Narcis

[ghost]

@whedon generate pdf

[whedon]

Attempting PDF compilation. Reticulating splines etc...

[whedon]

PDF failed to compile for issue #1588 with the following error:

Error reading bibliography ./paper.bib (line 24, column 3): unexpected "j" expecting space or "}" Error running filter pandoc-citeproc: Filter returned error status 1 Looks like we failed to compile the PDF

[ghost]

@whedon generate pdf

[whedon]

Attempting PDF compilation. Reticulating splines etc...

[whedon]

PDF failed to compile for issue #1588 with the following error:

Error reading bibliography ./paper.bib (line 29, column 1): unexpected "@" expecting space, ",", white space or "}" Error running filter pandoc-citeproc: Filter returned error status 1 Looks like we failed to compile the PDF

[ghost]

@whedon generate pdf

[whedon]

Attempting PDF compilation. Reticulating splines etc...

[whedon]

:point_right: Check article proof :page_facing_up: :point_left:

[ghost]

Dear Daniel S Katz,

Sorry for mispelling your name in a previous reply.

Best, D Narcis

[danielskatz]

Please carefully proofread your submission, and add DOIs to the bib entries for papers that have DOIs, again following the example in the JOSS documentation.

[danielskatz]

👋 @usethedata - would you be willing to edit this submission?

[ghost]

@whedon generate pdf

[whedon]

Attempting PDF compilation. Reticulating splines etc...

[whedon]

:point_right: Check article proof :page_facing_up: :point_left:

[ghost]

@whedon generate pdf

[whedon]

Attempting PDF compilation. Reticulating splines etc...

[whedon]

:point_right: Check article proof :page_facing_up: :point_left:

[ghost]

@whedon generate pdf

[whedon]

Attempting PDF compilation. Reticulating splines etc...

[whedon]

:point_right: Check article proof :page_facing_up: :point_left:

[usethedata]

@whedon assign @usethedata as editor

[whedon]

OK, the editor is @usethedata

[usethedata]

@dntrinca This is interesting work and thanks for your submission. However, we need to get a few more things take care of before this is ready to be reviewed. The biggest is that the readme should be more extensive. This is the key thing. There should also be guidelines for people wanting to contribute to the effort and for those who are looking for support. Please see the review criteria (https://joss.readthedocs.io/en/latest/review_criteria.html) for what we ask the reviewers to evaluate.

[ghost]

Dear Bruce Wilson, I will prepare this and reply to you soon. Best, D Narcis

[ghost]

@whedon generate pdf

[whedon]

Attempting PDF compilation. Reticulating splines etc...

[whedon]

:point_right: Check article proof :page_facing_up: :point_left:

[ghost]

@whedon generate pdf

[whedon]

Attempting PDF compilation. Reticulating splines etc...

[whedon]

:point_right: Check article proof :page_facing_up: :point_left:

[ghost]

@whedon generate pdf

[whedon]

Attempting PDF compilation. Reticulating splines etc...

[whedon]

:point_right: Check article proof :page_facing_up: :point_left:

[ghost]

@whedon generate pdf

[whedon]

Attempting PDF compilation. Reticulating splines etc...

[whedon]

:point_right: Check article proof :page_facing_up: :point_left:

[ghost]

@whedon generate pdf

[whedon]

Attempting PDF compilation. Reticulating splines etc...

[whedon]

PDF failed to compile for issue #1588 with the following error:

Error reading bibliography ./paper.bib (line 62, column 1): unexpected end of input expecting space, ",", white space or "}" Error running filter pandoc-citeproc: Filter returned error status 1 Looks like we failed to compile the PDF

[ghost]

@whedon generate pdf