[REVIEW]: LabelProp: A semi-automatic segmentation tool for 3D medical images

editorialbot commented 7 months ago

Submitting author: !--author-handle-->@nathandecaux@likeajumprope<!--end-editor-- Reviewers: @WangKehan573, @animikhaich Archive: Pending

Status

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Markdown: [![status](https://joss.theoj.org/papers/3e5dc820383e1ea71f538215cd54f4d4/status.svg)](https://joss.theoj.org/papers/3e5dc820383e1ea71f538215cd54f4d4)

Reviewers and authors:

Please avoid lengthy details of difficulties in the review thread. Instead, please create a new issue in the target repository and link to those issues (especially acceptance-blockers) by leaving comments in the review thread below. (For completists: if the target issue tracker is also on GitHub, linking the review thread in the issue or vice versa will create corresponding breadcrumb trails in the link target.)

Reviewer instructions & questions

@WangKehan573 & @animikhaich, your review will be checklist based. Each of you will have a separate checklist that you should update when carrying out your review. First of all you need to run this command in a separate comment to create the checklist:

@editorialbot generate my checklist

The reviewer guidelines are available here: https://joss.readthedocs.io/en/latest/reviewer_guidelines.html. Any questions/concerns please let @likeajumprope know.

✨ Please start on your review when you are able, and be sure to complete your review in the next six weeks, at the very latest ✨

Checklists

📝 Checklist for @animikhaich

editorialbot commented 7 months ago

Hello humans, I'm @editorialbot, a robot that can help you with some common editorial tasks.

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editorialbot commented 7 months ago

Software report:

github.com/AlDanial/cloc v 1.88  T=0.14 s (255.7 files/s, 30149.1 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
Python                          18            439            824           2407
Markdown                         4             58              0            146
TeX                              1             10              0            106
YAML                             2              7             10             42
DOS Batch                        1              8              1             27
reStructuredText                 7             28             27             27
PowerShell                       1              2            151             14
make                             1              4              6             10
Bourne Shell                     1              0              1              7
JSON                             1              0              0              1
-------------------------------------------------------------------------------
SUM:                            37            556           1020           2787
-------------------------------------------------------------------------------

gitinspector failed to run statistical information for the repository

editorialbot commented 7 months ago

Wordcount for paper.md is 842

editorialbot commented 7 months ago

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

OK DOIs

- 10.1016/j.patcog.2023.109529 is OK
- 10/gpjrzf is OK
- 10/gqg5d6 is OK
- 10/gh4vsp is OK
- 10/gfx7zs is OK

MISSING DOIs

- 10.1007/978-3-030-59710-8_2 may be a valid DOI for title: Scribble2Label: Scribble-Supervised Cell Segmentation via Self-Generating Pseudo-Labels with Consistency
- 10.1109/embc.2017.8036826 may be a valid DOI for title: Individual muscle segmentation in MR images: A 3D propagation through 2D non-linear registration approaches

INVALID DOIs

- None

editorialbot commented 7 months ago

:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:

animikhaich commented 7 months ago

Review checklist for @animikhaich

Conflict of interest

[x] I confirm that I have read the JOSS conflict of interest (COI) policy and that: I have no COIs with reviewing this work or that any perceived COIs have been waived by JOSS for the purpose of this review.

Code of Conduct

[x] I confirm that I read and will adhere to the JOSS code of conduct.

General checks

[x] Repository: Is the source code for this software available at the https://github.com/nathandecaux/labelprop?
[x] License: Does the repository contain a plain-text LICENSE or COPYING file with the contents of an OSI approved software license?
[x] Contribution and authorship: Has the submitting author (@nathandecaux) made major contributions to the software? Does the full list of paper authors seem appropriate and complete?
[x] Substantial scholarly effort: Does this submission meet the scope eligibility described in the JOSS guidelines
[x] Data sharing: If the paper contains original data, data are accessible to the reviewers. If the paper contains no original data, please check this item.
[x] Reproducibility: If the paper contains original results, results are entirely reproducible by reviewers. If the paper contains no original results, please check this item.
[x] Human and animal research: If the paper contains original data research on humans subjects or animals, does it comply with JOSS's human participants research policy and/or animal research policy? If the paper contains no such data, please check this item.

Functionality

[x] Installation: Does installation proceed as outlined in the documentation?
[x] Functionality: Have the functional claims of the software been confirmed?
[x] Performance: If there are any performance claims of the software, have they been confirmed? (If there are no claims, please check off this item.)

Documentation

[x] A statement of need: Do the authors clearly state what problems the software is designed to solve and who the target audience is?
[x] Installation instructions: Is there a clearly-stated list of dependencies? Ideally these should be handled with an automated package management solution.
[x] Example usage: Do the authors include examples of how to use the software (ideally to solve real-world analysis problems).
[x] Functionality documentation: Is the core functionality of the software documented to a satisfactory level (e.g., API method documentation)?
[x] Automated tests: Are there automated tests or manual steps described so that the functionality of the software can be verified?
[x] Community guidelines: Are there clear guidelines for third parties wishing to 1) Contribute to the software 2) Report issues or problems with the software 3) Seek support

Software paper

[x] Summary: Has a clear description of the high-level functionality and purpose of the software for a diverse, non-specialist audience been provided?
[x] A statement of need: Does the paper have a section titled 'Statement of need' that clearly states what problems the software is designed to solve, who the target audience is, and its relation to other work?
[x] State of the field: Do the authors describe how this software compares to other commonly-used packages?
[x] Quality of writing: Is the paper well written (i.e., it does not require editing for structure, language, or writing quality)?
[x] References: Is the list of references complete, and is everything cited appropriately that should be cited (e.g., papers, datasets, software)? Do references in the text use the proper citation syntax?

animikhaich commented 7 months ago

Hi @likeajumprope, Just wanted to give you a quick update. I'm still waiting for the changes for the updates requested above. I will resume my review once the changes have been made by the author. Please let me know if anything else is needed.

nathandecaux commented 7 months ago

Hello.The requested updates have been taken into account in the v1.2.2 release.

animikhaich commented 6 months ago

Hi @likeajumprope, Review completed from my end. Please let me know if anything else is needed.

likeajumprope commented 6 months ago

@WangKehan573, how is it going? Is there anything I could assist you with?

likeajumprope commented 6 months ago

Hi @likeajumprope, Review completed from my end. Please let me know if anything else is needed.

Thank you a lot @animikhaich

likeajumprope commented 5 months ago

Hi @WangKehan573, how is the status of the review? Is there anything I could assist you with? I have also reached out to you per email :)

oliviaguest commented 4 months ago

@likeajumprope have you heard back over email?

nathandecaux commented 3 months ago

Hello. I still haven't received any feedback. It seems that the second reviewer @WangKehan573 is simply no longer available. If this is really the case, what would be the next step? Thank you all for your time.

likeajumprope commented 3 months ago

Hello. I still haven't received any feedback. It seems that the second reviewer @WangKehan573 is simply no longer available. If this is really the case, what would be the next step? Thank you all for your time.

Yes, seems like this is the case. I will find another reviewer

nathandecaux commented 3 months ago

Hello, is there any news about the review?

likeajumprope commented 2 months ago

Hello, is there any news about the review?

I am working on it - updates to follow soon

openjournals / joss-reviews