[PRE REVIEW]: ngsPETSc: A coupling between NETGEN/NGSolve and PETSc

[editorialbot]

Submitting author: !--author-handle-->@uzerbinati<!--end-author-handle-- (Umberto Zerbinati) Repository: https://github.com/NGSolve/ngsPETSc Branch with paper.md (empty if default branch): Version: v.0.0.5 Editor: !--editor-->@jedbrown<!--end-editor-- Reviewers: Pending Managing EiC: Daniel S. Katz

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[editorialbot]

Software report:

github.com/AlDanial/cloc v 1.90  T=0.08 s (651.8 files/s, 365512.3 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
XML                              1          12092              0          11876
Python                          26            353            626           2244
reStructuredText                14            349            345           1179
TeX                              1              1              0            184
YAML                             4             29             17            161
Markdown                         2             23              0             77
Dockerfile                       1              0             11             54
make                             2              6              7             50
DOS Batch                        1              8              1             26
TOML                             1              0              0              3
-------------------------------------------------------------------------------
SUM:                            53          12861           1007          15854
-------------------------------------------------------------------------------

Commit count by author:

   223  Umberto Zerbinati
    11  Jack Betteridge
     8  Francesco Ballarin
     8  Stefano Zampini
     4  Matthew Scroggs
     2  Connor Ward
     1  Nacime Bouziani
     1  Pablo Brubeck

[editorialbot]

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

OK DOIs

- 10.5281/zenodo.12650574 is OK
- 10.1137/15M1025785 is OK
- 10.5802/smai-jcm.72 is OK
- 10.1007/s10208-005-0183-0 is OK

MISSING DOIs

- 10.1007/s007910050004 may be a valid DOI for title: NETGEN An advancing front 2D/3D-mesh generator bas...
- No DOI given, and none found for title: C++ 11 implementation of finite elements in NGSolv...
- No DOI given, and none found for title: Firedrake user manual
- No DOI given, and none found for title: PETSc/TAO Users Manual
- No DOI given, and none found for title: Parallel distributed computing using Python
- 10.1137/050646421 may be a valid DOI for title: An Augmented Lagrangian–Based Approach to the Osee...
- No DOI given, and none found for title: OpenCASCADE
- No DOI given, and none found for title: ML3.1 Smoothed Aggregation User’s Guide
- 10.1142/s0218202594000133 may be a valid DOI for title: Stability of higher order triangular Hood–Taylor m...
- No DOI given, and none found for title: A numerical solution of the Navier–Stokes equation...
- No DOI given, and none found for title: hypre: A Library of High Performance Preconditione...
- 10.1137/0907058 may be a valid DOI for title: GMRES: A Generalized Minimal Residual Algorithm fo...

INVALID DOIs

- https://doi.org/10.1016/S0021-9991(03)00194-3 is INVALID because of 'https://doi.org/' prefix
- https://doi.org/10.1002/nme.1620121010 is INVALID because of 'https://doi.org/' prefix

[editorialbot]

Paper file info:

📄 Wordcount for paper.md is 1201

✅ The paper includes a Statement of need section

[editorialbot]

License info:

✅ License found: MIT License (Valid open source OSI approved license)

[editorialbot]

:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:

[editorialbot]

Five most similar historical JOSS papers:

DMStag: Staggered, Structured Grids for PETSc Submitting author: @psanan Handling editor: @kyleniemeyer (Active) Reviewers: @elauksap, @mbarzegary Similarity score: 0.7462

OpenCMP: An Open-Source Computational Multiphysics Package Submitting author: @nasserma Handling editor: @lucydot (Active) Reviewers: @bonh, @WilkAndy Similarity score: 0.7422

GridapDistributed: a massively parallel finite element toolbox in Julia Submitting author: @amartinhuertas Handling editor: @Kevin-Mattheus-Moerman (Active) Reviewers: @PetrKryslUCSD, @Leticia-maria, @jedbrown Similarity score: 0.7406

scikit-fem: A Python package for finite element assembly Submitting author: @kinnala Handling editor: @meg-simula (Retired) Reviewers: @thelfer, @AnjaliSandip Similarity score: 0.7384

NGSTrefftz: Add-on to NGSolve for Trefftz methods Submitting author: @PaulSt Handling editor: @Nikoleta-v3 (Active) Reviewers: @mscroggs, @thelfer Similarity score: 0.7284

⚠️ Note to editors: If these papers look like they might be a good match, click through to the review issue for that paper and invite one or more of the authors before considering asking the reviewers of these papers to review again for JOSS.

[danielskatz]

👋 @jedbrown - would you be able to edit this submission?

[danielskatz]

@editorialbot invite @jedbrown as editor

[editorialbot]

Invitation to edit this submission sent!

[danielskatz]

👋 @UZerbinati - your readme appears blank, which will need to be changed to satisfy JOSS review criteria, such as in https://joss.readthedocs.io/en/latest/review_criteria.html#documentation

[UZerbinati]

Hi @danielskatz ! Thank you for letting me know: I've updated the README to include a statement of need, installation instructions and a minimal example on how to test the code. Also, I now realise that I miss-typed the title of the paper during submission, the correct title should be: "ngsPETSc: A coupling between NETGEN/NGSolve and PETSc"

[danielskatz]

I've changed the title here. The editor may also need to change it once the review starts and that issue is created.

[UZerbinati]

I've added DOIs for the papers I could find a DOI for. I suspect there are no DOIs for the remaining papers. @editorialbot generate pdf @editorialbot check references

[danielskatz]

@UZerbinati - A JOSS command needs to be the first thing in a new comment

[UZerbinati]

@editorialbot check references

[editorialbot]

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

OK DOIs

- 10.1007/s007910050004 is OK
- 10.25561/104839 is OK
- 10.2172/2205494 is OK
- 10.1016/j.advwatres.2011.04.013 is OK
- 10.5281/zenodo.12650574 is OK
- 10.1137/15M1025785 is OK
- 10.1016/S0021-9991(03)00194-3 is OK
- 10.1137/050646421 is OK
- 10.1002/nme.1620121010 is OK
- 10.5802/smai-jcm.72 is OK
- 10.1142/S0218202594000133 is OK
- 10.1016/0045-7930(73)90027-3 is OK
- 10.1007/3-540-47789-6_66 is OK
- 10.1137/0907058 is OK
- 10.1007/s10208-005-0183-0 is OK

MISSING DOIs

- No DOI given, and none found for title: C++ 11 implementation of finite elements in NGSolv...
- No DOI given, and none found for title: OpenCASCADE
- No DOI given, and none found for title: ML3.1 Smoothed Aggregation User’s Guide

INVALID DOIs

- None

[UZerbinati]

@editorialbot generate pdf

[editorialbot]

:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:

[editorialbot]

Five most similar historical JOSS papers:

DMStag: Staggered, Structured Grids for PETSc Submitting author: @psanan Handling editor: @kyleniemeyer (Active) Reviewers: @elauksap, @mbarzegary Similarity score: 0.7412

OpenCMP: An Open-Source Computational Multiphysics Package Submitting author: @nasserma Handling editor: @lucydot (Active) Reviewers: @bonh, @WilkAndy Similarity score: 0.7377

GridapDistributed: a massively parallel finite element toolbox in Julia Submitting author: @amartinhuertas Handling editor: @Kevin-Mattheus-Moerman (Active) Reviewers: @PetrKryslUCSD, @Leticia-maria, @jedbrown Similarity score: 0.7324

scikit-fem: A Python package for finite element assembly Submitting author: @kinnala Handling editor: @meg-simula (Retired) Reviewers: @thelfer, @AnjaliSandip Similarity score: 0.7322

FEniCS-arclength: A numerical continuation package in FEniCS for nonlinear problems in solid mechanics Submitting author: @pprachas Handling editor: @prashjha (Active) Reviewers: @w-luo-academic, @kingyin3613 Similarity score: 0.7253

⚠️ Note to editors: If these papers look like they might be a good match, click through to the review issue for that paper and invite one or more of the authors before considering asking the reviewers of these papers to review again for JOSS.

[jedbrown]

@editorialbot assign @jedbrown as editor

:wave: Hi, sorry to be slow picking this up.

[editorialbot]

Assigned! @jedbrown is now the editor

[danielskatz]

thanks @jedbrown

[danielskatz]

👋 @jedbrown - are you now working on getting this started?