[PRE REVIEW]: PestoSeis: A Python package for 2D wave physics and educational seismology

[editorialbot]

Submitting author: !--author-handle-->@inverseproblem<!--end-author-handle-- (Andrea Zunino) Repository: https://gitlab.com/anzun/PestoSeis Branch with paper.md (empty if default branch): main Version: v0.3.0 Editor: Pending Reviewers: Pending Managing EiC: Kristen Thyng

Status

Status badge code:

HTML: <a href="https://joss.theoj.org/papers/82936c8abb25e8ce35f5046ced1bd0ec"><img src="https://joss.theoj.org/papers/82936c8abb25e8ce35f5046ced1bd0ec/status.svg"></a>
Markdown: [![status](https://joss.theoj.org/papers/82936c8abb25e8ce35f5046ced1bd0ec/status.svg)](https://joss.theoj.org/papers/82936c8abb25e8ce35f5046ced1bd0ec)

Author instructions

Thanks for submitting your paper to JOSS @inverseproblem. Currently, there isn't a JOSS editor assigned to your paper.

@inverseproblem if you have any suggestions for potential reviewers then please mention them here in this thread (without tagging them with an @). You can search the list of people that have already agreed to review and may be suitable for this submission.

Editor instructions

The JOSS submission bot @editorialbot is here to help you find and assign reviewers and start the main review. To find out what @editorialbot can do for you type:

@editorialbot commands

[editorialbot]

Hello human, I'm @editorialbot, a robot that can help you with some common editorial tasks.

For a list of things I can do to help you, just type:

@editorialbot commands

For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:

@editorialbot generate pdf

[editorialbot]

:warning: An error happened when generating the pdf.

[editorialbot]

Software report:

github.com/AlDanial/cloc v 1.90  T=0.01 s (742.9 files/s, 83208.9 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
TeX                              2             12              0            189
Markdown                         2             37              0            145
Jupyter Notebook                 1              0            282             98
YAML                             1              2              0             18
Bourne Shell                     1              0              0              1
-------------------------------------------------------------------------------
SUM:                             7             51            282            451
-------------------------------------------------------------------------------

Commit count by author:

    12  Ines Elisa Ulrich
    10  Patrick Marty
     8  Andrea Zunino
     3  inverseproblem

[editorialbot]

Paper file info:

📄 Wordcount for paper.md is 1470

✅ The paper includes a Statement of need section

[editorialbot]

License info:

🔴 Failed to discover a valid open source license

[kthyng]

@inverseproblem Can you take a look at the paper compilation error and try to fix it?

[inverseproblem]

@editorialbot generate pdf

[editorialbot]

:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:

[editorialbot]

Five most similar historical JOSS papers:

SeismicMesh: Triangular meshing for seismology Submitting author: @krober10nd Handling editor: @meg-simula (Retired) Reviewers: @nschloe, @jorgensd Similarity score: 0.7100

elwaspatid: A Python package to compute space-time diagrams for the propagation of elastic waves in 1D rods Submitting author: @dbrizard Handling editor: @diehlpk (Active) Reviewers: @obsmax, @MargeritPierre Similarity score: 0.7086

pyprop8: A lightweight code to simulate seismic observables in a layered half-space Submitting author: @valentineap Handling editor: @leouieda (Retired) Reviewers: @hemmelig, @hfmark Similarity score: 0.6972

APECSS: A software library for cavitation bubble dynamics and acoustic emissions Submitting author: @fabiandenner Handling editor: @kyleniemeyer (Active) Reviewers: @jmansour, @svchb Similarity score: 0.6942

rsudp: A Python package for real-time seismic monitoring with Raspberry Shake instruments Submitting author: @iannesbitt Handling editor: @jedbrown (Active) Reviewers: @fwalter, @calum-chamberlain Similarity score: 0.6798

⚠️ Note to editors: If these papers look like they might be a good match, click through to the review issue for that paper and invite one or more of the authors before considering asking the reviewers of these papers to review again for JOSS.

[inverseproblem]

@kthyng I believe the error should now be fixed. Thanks!

[kthyng]

@editorialbot set main as branch

[editorialbot]

Done! branch is now main

[kthyng]

@editorialbot check repository

[editorialbot]

Software report:

github.com/AlDanial/cloc v 1.90  T=0.11 s (427.4 files/s, 345817.1 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
SVG                              3              2              2          10306
Python                          21           1414           2598           3111
Jupyter Notebook                 9              0          19124            564
reStructuredText                10            246            181            341
YAML                             1              5              0             32
DOS Batch                        1              8              1             26
Markdown                         1             21              0             20
make                             1              4              6             13
-------------------------------------------------------------------------------
SUM:                            47           1700          21912          14413
-------------------------------------------------------------------------------

Commit count by author:

    52  Andrea Zunino
    50  Ines Elisa Ulrich
    38  Patrick Marty
    15  inverseproblem
     9  Andrea Z
     1  anzun
     1  inesulrich

[editorialbot]

Paper file info:

⚠️ Failed to find a paper file in https://gitlab.com/anzun/PestoSeis (branch: main)

[editorialbot]

License info:

🟡 License found: GNU General Public License v3.0 (Check here for OSI approval)

[kthyng]

@inverseproblem I like that this code works to be clear and easy to understand, but it does state "do not use this code for research." (https://anzun.gitlab.io/PestoSeis/). This is a problem for JOSS since our mission is to publish research code. Maybe your package would be a better fit for JOSE? https://jose.theoj.org/

[kthyng]

@inverseproblem Any thoughts on my comment ⬆️ ?

[inverseproblem]

@kthyng, thanks, we think this is indeed a good suggestion, we didn't realise there was that possibility earlier. So, how should I proceed in order to withdraw the submission here and switch to JOSE?

[kthyng]

If you tell me to go ahead, I will run the command to withdraw your submission, then you go to https://jose.theoj.org/ and go through the process there to submit.

[inverseproblem]

Ok, so, please go ahead with the withdrawal. Thank you!

[kthyng]

@editorialbot withdraw

[editorialbot]

Paper withdrawn.

[kthyng]

@inverseproblem Good luck with your submission with JOSE!