Open Targets Platform & Open Targets Genetics

This repo is the issue tracker for the Open Targets Platform and Open Targets Genetics projects. All issues should be raised here.

Additional metadata about tickets, roadmap and priorities is available via Zenhub

Site

Go to the Open Targets Platform site.

Go to the Open Targets Genetics site.

Docs

Go to the Open Targets Platform docs.

Go to the Open Targets Genetics docs.

Other relevant repos

Platform

The project code is distributed across several repos, the most relevant of which are:

• platform-app: the front-end app
• GraphQL api: the GraphQL api (used by platform-app, but can also be used independently; docs)
• docs: the pipeline to generate the OT data

Genetics

The project code is distributed across several repos, the most relevant of which are:

• genetics-app: the front-end UI app
• genetics-api: the graphql api
• V2G: Variant to gene data including tissues and cell-lines
• V2D: Variant to disease data
• genetics-pipe: the data pipeline
• genetics-backend: scripts to load the data into clickhouse
• genetics-sumstat-data: workflows for processing summary statistics files
• genetics-variant-annotation: workflow to produce variant index annotation
• genetics-finemapping: repo of the fine-mapping pipeline
• terraform-google-genetics-portal: repo for Genetics Portal deployment