Adding mhcflurry, upgrading Python stack

openvax / neoantigen-vaccine-pipeline

Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines

Apache License 2.0

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Closed julia326 closed 2 months ago

julia326 commented 2 months ago

Main changes:

Update to vaxrank 1.4.0 and includes corresponding other Python tool changes to support that
Include mhcflurry, and keep a single conda environment for all Python tools