openvax / varlens

commandline manipulation of genomic variants and NGS reads
Apache License 2.0
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get rid of the python-based dsl #17

Closed timodonnell closed 8 years ago

timodonnell commented 8 years ago

It's extremely flexible to be able to say things like --variant-filter 'ref=="A"' but I think in practice it's too confusing to figure out what sort of expressions are legal, and for complicated stuff you should just make a csv with varlens and then apply your own filtering. We should drop the dsl and replace it with explicit commandline options for common kinds of filters