Added fasta file generation flag to the CLI for user story 3

oxfordmmm / gnomonicus

Python code to integrate results of tb-pipeline and provide an antibiogram, mutations and variants

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Closed JeremyWesthead closed 2 years ago

JeremyWesthead commented 2 years ago

Simple flag to save resultant genome after applying VCF by utilising the gumpy function save_fasta