Add minor index parsing to the CLI script + various pandas index fixes

oxfordmmm / gnomonicus

Python code to integrate results of tb-pipeline and provide an antibiogram, mutations and variants

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Closed JeremyWesthead closed 1 year ago

JeremyWesthead commented 1 year ago

Minor indices can now be specified via the CLI through a line separated file using the --minority_populations flag, e.g:

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