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pFindStudio / pLink2

pLink is a software dedicated for the analysis of chemically cross-linked proteins or protein complexes using mass spectrometry.
http://pfind.ict.ac.cn/software/pLink/index.html
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pLINK 2 is stucked and I cannot go on with my analyses. #75

Open Stamburr opened 4 years ago

Stamburr commented 4 years ago

[pLink] Welcome to use pLink v2.3.9, it will be expired on 20230110 [pLink] Search Engine initializing... [pLink] Generating reverse database... [pLink] Search identifier: KFNZU [pLink] Search Engine is ready to search.

[pLink] Start searching C:\Users\ieo4635\Desktop\PCGF3\pLink_task_2020.03.27.12.03.42\QEPlus_200307_ST_DP_P3_XL_3ul_01_HCDFT.pf2, Labeling None

Stamburr commented 4 years ago

The only difference that I saw compared to the example reported in the manual is in PROCESS NUMBER. I have 1 while in the example is 4. What does it represent? thnks

01joy commented 4 years ago

Please check whether the file exists: C:\Users\ieo4635\Desktop\PCGF3\pLink_task_2020.03.27.12.03.42\QEPlus_200307_ST_DP_P3_XL_3ul_01_HCDFT.pf2.

If not, please install MSFileReader according to this wiki: https://github.com/pFindStudio/pLink2/wiki/FAQ#how-to-install-msfilereader

Stamburr commented 4 years ago

Hi, I'm trying to use pLINK software 2.3.9 but every time I need to add a new database the pCONFIG software crashes. What should I do?

Thanks inadvance

Simone

01joy commented 4 years ago

Dear @Stamburr ,

Configuring meta data using pConfig needs write permission to the installation folder of pLink. If pLink was installed to folders like C:\Program Files or C:\Program Files (x86), you will need the administrator privilege to run the pConfig/pLink. The default installation folder (C:\pFindStudio\pLink) was recommended to install pLink.

Another possible reason may be that the paths of some fasta files contain special characters. Please make sure each file path contains only alphabets and numbers, no whitespaces or special characters.

If the problem still exists, please provide all *.ini files in the installation folder of pLink.

Stamburr commented 4 years ago

Thanks for your answer. Thnks for your time I will doit.

I hope everything is going well with this evil virus,

Regards

Simone

Il giorno dom 22 nov 2020 alle ore 15:05 bitJoy notifications@github.com ha scritto:

Dear @Stamburr https://github.com/Stamburr ,

Configuring meta data using pConfig needs write permission to the installation folder of pLink. If pLink was installed to folders like C:\Program Files or C:\Program Files (x86), you will need the administrator privilege to run the pConfig/pLink. The default installation folder ( C:\pFindStudio\pLink) was recommended to install pLink.

Another possible reason may be that the paths of some fasta files contain special characters. Please make sure each file path contains only alphabets and numbers, no whitespaces or special characters.

If the problem still exists, please provide all *.ini files in the installation folder of pLink.

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/pFindStudio/pLink2/issues/75#issuecomment-731753413, or unsubscribe https://github.com/notifications/unsubscribe-auth/AO6XROPYSIZKBG5B2KKJA6LSRELCLANCNFSM4LWPSWRQ .

Stamburr commented 4 years ago

Sorry to bother you a lot. This is what I have in my folder. I don't see the ini file

Simone

Il giorno dom 22 nov 2020 alle ore 15:05 bitJoy notifications@github.com ha scritto:

Dear @Stamburr https://github.com/Stamburr ,

Configuring meta data using pConfig needs write permission to the installation folder of pLink. If pLink was installed to folders like C:\Program Files or C:\Program Files (x86), you will need the administrator privilege to run the pConfig/pLink. The default installation folder ( C:\pFindStudio\pLink) was recommended to install pLink.

Another possible reason may be that the paths of some fasta files contain special characters. Please make sure each file path contains only alphabets and numbers, no whitespaces or special characters.

If the problem still exists, please provide all *.ini files in the installation folder of pLink.

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/pFindStudio/pLink2/issues/75#issuecomment-731753413, or unsubscribe https://github.com/notifications/unsubscribe-auth/AO6XROPYSIZKBG5B2KKJA6LSRELCLANCNFSM4LWPSWRQ .

Aries2499 commented 2 years ago

Hola!!! Tengo el pLink 2.3.11. Después de añadir varios Linkers y salvarlos en el pConfig, cuando intento volver a entrar a esta pestaña, me sale un cartel de como que ha ocurrido un problema y se cierra el pConfig. A qué se puede deber esto???

Por otra parte, después de haber puesto todas las condiciones para el análisis, le di Start en el pLink, empieza correr correctamente hasta que me salió [pLink] Generating reverse database... Lleva en este punto más de 30 minutos, esto puedo pasar?, este punto se demora mucho??