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pachterlab / kma

Keep Me Around: Intron Retention Detection
GNU General Public License v2.0
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can quantification by kallisto being supported? #14

Open trptyrphe11 opened 7 years ago

trptyrphe11 commented 7 years ago

Hi,

Since eXpress is not being maintained and kallisto is among the state-of-the-art transcript quantification tools, can kallisto output (quantified on transcript.fa) being support by KMA? Thanks.

ClaireMargolis commented 7 years ago

+1! Would love this functionality as well!

pimentel commented 7 years ago

this is definitely coming soon along with a bunch of other updates.

thanks,

harold

lynnyi commented 6 years ago

Me too! For the time being, can we build a kallisto index of introns and transcripts?

edkonyakhina commented 5 years ago

I would also like to use kallisto or other quantification tool, because Express often runs out of memory on my data.