Closed visze closed 11 months ago
Same for region_type
. Because not every designed sequence is a "real" genomic sequence gDNA
I would rather use DNA
than gDNA
. but DNA
is not allowed
Good idea to have dna as one of the modalities and region_types. Can you put in a pull request to the spec and I can review and accept?
I've gone ahead and added dna
to both region_type
and modalities
in the most recent commit.
https://github.com/IGVF/seqspec/commit/5f17ffcfb11aef35d43166f16488164f15f13451
I try to create a seqspec file for MPRAs. for teh aqssignment sequencing we are sequencing genomic/synthetic regions which we designed and the BC which is associated with. So I would say this is sequencing of a DNA modality. But seqspec allows only this:
'DNA' is not one of ['rna', 'tag', 'protein', 'atac', 'crispr'] in spec['modalities'][0]
None of them fits to the modality in our case