cannot start Sircel via ./sircel

pachterlab / sircel

Identify cell barcodes from single-cell genomics sequencing experiments

MIT License

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cannot start Sircel via ./sircel #10

Closed doublehelixlf closed 7 years ago

doublehelixlf commented 7 years ago

After installing the most recent version of Sircel, it appears that there is no executable file named "sircel" in under the master folder.

Therefore there is no way to run sircel via ./sircel

axtambe commented 7 years ago

If you install with the command: python3 setup.py install --kallisto PATH_TO_KALLISTO, the executable is by default placed in /usr/local/bin.

To have the executable in the sircel/ directory, install with the following option python3 setup.py install --kallisto PATH_TO_KALLISTO --install-scripts=./sircel/

Thanks for catching this