ValueError: `column` parameter (1) is not in a valid range (0-0) for line 14 ('\n')

I'm experiencing weird behavior of the jedi lsp server after OS upgrade. This message shows up in Neovim when I move cursor at empty line of a python file.

The behaviour is weird because I have another almost identical machine, with the same version of the jedi lsp installed via Mason. So that other machine worked fine, until I upgraded AstronVim to version 3.39 (was 3.37). However, downgading back doesn't help, so I stuck with this issue on both machines.

I've tried different Python versions (3.9, 3.10, 3.11), also nvim versions 0.9.2 / 0.9.4, also different jedi-lsp servers 0.39, 0.40, 0.41.2. In all of these the issue remains the same.

Are there any moving parts I'm missing? As I noticed, during the upgrade the AstronVim also compiles TreeSitter, can this be a reason?

Technical stuff

lsp_signatur handler RPC[Error] code_name = InternalError, message = "ValueError: `column` parameter (1) is not in a valid range (0-0) for line 14 ('\n')." data = {
  traceback = { '  File "/home/user/.local/share/nvim/mason/packages/jedi-language-server/venv/lib/python3.11/site-packages/pygls/protocol/json_rpc.py", line 266, in _h
andle_request
    self._execute_request(msg_id, handler, params)
', '  File "/home/user/.local/share/nvim/mason/packages/jedi-language-server/venv/lib/python3.11/site
-packages/pygls/protocol/json_rpc.py", line 188, in _execute_request
    self._send_response(msg_id, handler(params))
                                ^^^^^^^^^^^^^^^
', '
 File "/home/user/.local/share/nvim/mason/packages/jedi-language-server/venv/lib/python3.11/site-packages/jedi_language_server/server.py", line 277, in signature_help

    signatures_jedi = jedi_script.get_signatures(*jedi_lines)
                      ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
', "  File "/home/user/.local/share/nvim/
mason/packages/jedi-language-server/venv/lib/python3.11/site-packages/jedi/api/helpers.py", line 484, in wrapper
    raise ValueError('`column` parameter (%d) is not in a v
alid range '

" }

My environment (my alt machine where everything worked):

Debian 12 (alt Debian 12)
Neovim 0.9.4 (alt 0.9.2)
Python 3.10.13 (alt 3.10.10)
Astronvim 3.39 (alt 3.37)

Mason env pip freeze (same for both machines)

(venv) ~/.local/share/nvim/mason/packages/jedi-language-server/venv ➜ bin/pip freeze
attrs==23.1.0
cattrs==23.1.2
docstring-to-markdown==0.13
exceptiongroup==1.2.0
jedi==0.19.1
jedi-language-server==0.41.2
lsprotocol==2023.0.0
parso==0.8.3
pygls==1.2.1
typing_extensions==4.8.0

pappasam / jedi-language-server

ValueError: `column` parameter (1) is not in a valid range (0-0) for line 14 ('\n') #298