fsleyes - ventura error

[nmskhan]

Hi I updated my Mac to Ventura 13.4 recently and I noticed that there was an error in launching fsl from the terminal as well as the icon, fsl popped up and says loading, but nothing happened for several hours. I had to forcefully quit. However, all fsl command functions (math and other functions) work in the terminal. Any suggestions are appreciated

These are the errors that appeared in the terminal during the launch

WARNING init.py 628: create - GLContext callback function raised ImportError: ('Unable to load OpenGL library', "dlopen(OpenGL, 0x000A): tried: 'OpenGL' (no such file), '/System/Volumes/Preboot/Cryptexes/OSOpenGL' (no such file), '/usr/local/fsl/fslpython/envs/fslpython/lib/OpenGL' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/usr/local/fsl/fslpython/envs/fslpython/lib/OpenGL' (no such file), '/usr/local/fsl/fslpython/envs/fslpython/lib/OpenGL' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/usr/local/fsl/fslpython/envs/fslpython/lib/OpenGL' (no such file), '/usr/local/fsl/fslpython/envs/fslpython/lib/OpenGL' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/usr/local/fsl/fslpython/envs/fslpython/lib/OpenGL' (no such file), '/usr/local/fsl/fslpython/envs/fslpython/lib/python3.7/lib-dynload/../../OpenGL' (no such file), '/usr/local/fsl/fslpython/envs/fslpython/lib/OpenGL' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/usr/local/fsl/fslpython/envs/fslpython/lib/OpenGL' (no such file), '/usr/local/fsl/fslpython/envs/fslpython/lib/OpenGL' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/usr/local/fsl/fslpython/envs/fslpython/lib/OpenGL' (no such file), '/usr/local/fsl/fslpython/envs/fslpython/python.app/Contents/MacOS/../lib/OpenGL' (no such file), '/usr/local/fsl/fslpython/envs/fslpython/python.app/Contents/MacOS/../../../lib/OpenGL' (no such file), '/usr/lib/OpenGL' (no such file, not in dyld cache), 'OpenGL' (no such file), '/usr/local/lib/OpenGL' (no such file), '/usr/lib/OpenGL' (no such file, not in dyld cache)", 'OpenGL', None) Traceback (most recent call last): File "/usr/local/fsl/fslpython/envs/fslpython/lib/python3.7/site-packages/OpenGL/platform/darwin.py", line 38, in GL mode=ctypes.RTLD_GLOBAL File "/usr/local/fsl/fslpython/envs/fslpython/lib/python3.7/site-packages/OpenGL/platform/ctypesloader.py", line 45, in loadLibrary return dllType( name, mode ) File "/usr/local/fsl/fslpython/envs/fslpython/lib/python3.7/ctypes/init.py", line 356, in init self._handle = _dlopen(self._name, mode) OSError: ("dlopen(OpenGL, 0x000A): tried: 'OpenGL' (no such file), '/System/Volumes/Preboot/Cryptexes/OSOpenGL' (no such file), '/usr/local/fsl/fslpython/envs/fslpython/lib/OpenGL' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/usr/local/fsl/fslpython/envs/fslpython/lib/OpenGL' (no such file), '/usr/local/fsl/fslpython/envs/fslpython/lib/OpenGL' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/usr/local/fsl/fslpython/envs/fslpython/lib/OpenGL' (no such file), '/usr/local/fsl/fslpython/envs/fslpython/lib/OpenGL' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/usr/local/fsl/fslpython/envs/fslpython/lib/OpenGL' (no such file), '/usr/local/fsl/fslpython/envs/fslpython/lib/python3.7/lib-dynload/../../OpenGL' (no such file), '/usr/local/fsl/fslpython/envs/fslpython/lib/OpenGL' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/usr/local/fsl/fslpython/envs/fslpython/lib/OpenGL' (no such file), '/usr/local/fsl/fslpython/envs/fslpython/lib/OpenGL' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/usr/local/fsl/fslpython/envs/fslpython/lib/OpenGL' (no such file), '/usr/local/fsl/fslpython/envs/fslpython/python.app/Contents/MacOS/../lib/OpenGL' (no such file), '/usr/local/fsl/fslpython/envs/fslpython/python.app/Contents/MacOS/../../../lib/OpenGL' (no such file), '/usr/lib/OpenGL' (no such file, not in dyld cache), 'OpenGL' (no such file), '/usr/local/lib/OpenGL' (no such file), '/usr/lib/OpenGL' (no such file, not in dyld cache)", 'OpenGL', None)

During the handling of the above exception, another exception occurred:

Traceback (most recent call last): File "/usr/local/fsl/fslpython/envs/fslpython/lib/python3.7/site-packages/fsleyes/gl/init.py", line 622, in create ready() File "/usr/local/fsl/fslpython/envs/fslpython/lib/python3.7/site-packages/fsleyes/main.py", line 537, in realCallback fslgl.bootstrap(namespace.glversion) File "/usr/local/fsl/fslpython/envs/fslpython/lib/python3.7/site-packages/fsleyes/gl/init.py", line 301, in bootstrap import OpenGL.GL as gl File "/usr/local/fsl/fslpython/envs/fslpython/lib/python3.7/site-packages/OpenGL/GL/init.py", line 3, in from OpenGL import error as _error File "/usr/local/fsl/fslpython/envs/fslpython/lib/python3.7/site-packages/OpenGL/error.py", line 12, in from OpenGL import platform, _configflags File "/usr/local/fsl/fslpython/envs/fslpython/lib/python3.7/site-packages/OpenGL/platform/init.py", line 35, in _load() File "/usr/local/fsl/fslpython/envs/fslpython/lib/python3.7/site-packages/OpenGL/platform/init.py", line 32, in _load plugin.install(globals()) File "/usr/local/fsl/fslpython/envs/fslpython/lib/python3.7/site-packages/OpenGL/platform/baseplatform.py", line 92, in install namespace[ name ] = getattr(self,name,None) File "/usr/local/fsl/fslpython/envs/fslpython/lib/python3.7/site-packages/OpenGL/platform/baseplatform.py", line 14, in get value = self.fget( obj ) File "/usr/local/fsl/fslpython/envs/fslpython/lib/python3.7/site-packages/OpenGL/platform/darwin.py", line 62, in GetCurrentContext return self.CGL.CGLGetCurrentContext File "/usr/local/fsl/fslpython/envs/fslpython/lib/python3.7/site-packages/OpenGL/platform/baseplatform.py", line 14, in get value = self.fget( obj ) File "/usr/local/fsl/fslpython/envs/fslpython/lib/python3.7/site-packages/OpenGL/platform/darwin.py", line 45, in CGL def CGL(self): return self.GL File "/usr/local/fsl/fslpython/envs/fslpython/lib/python3.7/site-packages/OpenGL/platform/baseplatform.py", line 14, in get value = self.fget( obj ) File "/usr/local/fsl/fslpython/envs/fslpython/lib/python3.7/site-packages/OpenGL/platform/darwin.py", line 41, in GL raise ImportError("Unable to load OpenGL library", *err.args) ImportError: ('Unable to load OpenGL library', "dlopen(OpenGL, 0x000A): tried: 'OpenGL' (no such file), '/System/Volumes/Preboot/Cryptexes/OSOpenGL' (no such file), '/usr/local/fsl/fslpython/envs/fslpython/lib/OpenGL' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/usr/local/fsl/fslpython/envs/fslpython/lib/OpenGL' (no such file), '/usr/local/fsl/fslpython/envs/fslpython/lib/OpenGL' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/usr/local/fsl/fslpython/envs/fslpython/lib/OpenGL' (no such file), '/usr/local/fsl/fslpython/envs/fslpython/lib/OpenGL' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/usr/local/fsl/fslpython/envs/fslpython/lib/OpenGL' (no such file), '/usr/local/fsl/fslpython/envs/fslpython/lib/python3.7/lib-dynload/../../OpenGL' (no such file), '/usr/local/fsl/fslpython/envs/fslpython/lib/OpenGL' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/usr/local/fsl/fslpython/envs/fslpython/lib/OpenGL' (no such file), '/usr/local/fsl/fslpython/envs/fslpython/lib/OpenGL' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/usr/local/fsl/fslpython/envs/fslpython/lib/OpenGL' (no such file), '/usr/local/fsl/fslpython/envs/fslpython/python.app/Contents/MacOS/../lib/OpenGL' (no such file), '/usr/local/fsl/fslpython/envs/fslpython/python.app/Contents/MacOS/../../../lib/OpenGL' (no such file), '/usr/lib/OpenGL' (no such file, not in dyld cache), 'OpenGL' (no such file), '/usr/local/lib/OpenGL' (no such file), '/usr/lib/OpenGL' (no such file, not in dyld cache)", 'OpenGL', None)

[pauldmccarthy]

Hi @nmskhan, it looks like your OS update has broken the $FSLDIR/fslpython/ conda environment, so I'd recommend re-installing FSL.

[nmskhan]

Thank you ! I will reinstall it.