Open Zireael opened 4 years ago
libzmq3-dev is required for zmq4. You made it a comment, so it's not installed.
Hi, libzmq3-dev
is installed earlier in my base image. I commented it out in my dockerfile just before gophernotes because I was specifically checking to install it, but got installer message that libzmq3-dev
is already in the system.
I updated the minimum failing example with specifically installing libzmq3-dev
and then listing all the packages installed.
Fail message still remains (excuse crossed out lines - that's markdown syntax getting in the way):
RUN go get -u github.com/gopherdata/gophernotes github.com/gopherdata/gophernotes/vendor/github.com/pebbe/zmq4 /go/src/github.com/gopherdata/gophernotes/vendor/github.com/pebbe/zmq4/reactor.go:10:4: undefined: State /go/src/github.com/gopherdata/gophernotes/vendor/github.com/pebbe/zmq4/reactor.go:11:9: undefined: State The command '/bin/sh -c go get -u github.com/gopherdata/gophernotes' returned a non-zero code: 2
Here are lists of packages installed by apt, conda and pip:
RUN apt list --installed Listing... adduser/bionic,now 3.116ubuntu1 all [installed] apt/now 1.6.11 amd64 [installed,upgradable to: 1.6.12] base-files/now 10.1ubuntu2.4 amd64 [installed,upgradable to: 10.1ubuntu2.7] base-passwd/bionic,now 3.5.44 amd64 [installed] bash/now 4.4.18-2ubuntu1.1 amd64 [installed,upgradable to: 4.4.18-2ubuntu1.2] bsdutils/now 1:2.31.1-0.4ubuntu3.3 amd64 [installed,upgradable to: 1:2.31.1-0.4ubuntu3.4] bzip2/bionic-updates,bionic-security,now 1.0.6-8.1ubuntu0.2 amd64 [installed] ca-certificates/bionic,bionic-updates,now 20180409 all [installed] coreutils/bionic,now 8.28-1ubuntu1 amd64 [installed] dash/bionic,now 0.5.8-2.10 amd64 [installed] debconf/bionic-updates,now 1.5.66ubuntu1 all [installed] debianutils/bionic,now 4.8.4 amd64 [installed] diffutils/bionic,now 1:3.6-1 amd64 [installed] dpkg/now 1.19.0.5ubuntu2.1 amd64 [installed,upgradable to: 1.19.0.5ubuntu2.3] e2fsprogs/now 1.44.1-1ubuntu1.1 amd64 [installed,upgradable to: 1.44.1-1ubuntu1.2] fdisk/now 2.31.1-0.4ubuntu3.3 amd64 [installed,upgradable to: 2.31.1-0.4ubuntu3.4] findutils/bionic,now 4.6.0+git+20170828-2 amd64 [installed] fonts-liberation/bionic-updates,now 1:1.07.4-7~18.04.1 all [installed] gcc-8-base/now 8.3.0-6ubuntu1~18.04 amd64 [installed,upgradable to: 8.3.0-6ubuntu1~18.04.1] gpgv/bionic-updates,bionic-security,now 2.2.4-1ubuntu1.2 amd64 [installed] grep/bionic,now 3.1-2 amd64 [installed,upgradable to: 3.1-2build1] gzip/bionic,now 1.6-5ubuntu1 amd64 [installed] hostname/bionic,now 3.20 amd64 [installed] init-system-helpers/bionic,now 1.51 all [installed] libacl1/bionic,now 2.2.52-3build1 amd64 [installed] libapt-pkg5.0/now 1.6.11 amd64 [installed,upgradable to: 1.6.12] libattr1/bionic,now 1:2.4.47-2build1 amd64 [installed] libaudit-common/bionic,now 1:2.8.2-1ubuntu1 all [installed] libaudit1/bionic,now 1:2.8.2-1ubuntu1 amd64 [installed] libblkid1/now 2.31.1-0.4ubuntu3.3 amd64 [installed,upgradable to: 2.31.1-0.4ubuntu3.4] libbz2-1.0/bionic-updates,bionic-security,now 1.0.6-8.1ubuntu0.2 amd64 [installed] libc-bin/bionic,now 2.27-3ubuntu1 amd64 [installed] libc6/bionic,now 2.27-3ubuntu1 amd64 [installed] libcap-ng0/bionic,now 0.7.7-3.1 amd64 [installed] libcom-err2/now 1.44.1-1ubuntu1.1 amd64 [installed,upgradable to: 1.44.1-1ubuntu1.2] libdb5.3/bionic-updates,bionic-security,now 5.3.28-13.1ubuntu1.1 amd64 [installed] libdebconfclient0/bionic,now 0.213ubuntu1 amd64 [installed] libext2fs2/now 1.44.1-1ubuntu1.1 amd64 [installed,upgradable to: 1.44.1-1ubuntu1.2] libfdisk1/now 2.31.1-0.4ubuntu3.3 amd64 [installed,upgradable to: 2.31.1-0.4ubuntu3.4] libffi6/bionic,now 3.2.1-8 amd64 [installed] libgcc1/now 1:8.3.0-6ubuntu1~18.04 amd64 [installed,upgradable to: 1:8.3.0-6ubuntu1~18.04.1] libgcrypt20/bionic-updates,bionic-security,now 1.8.1-4ubuntu1.1 amd64 [installed] libgmp10/bionic,now 2:6.1.2+dfsg-2 amd64 [installed] libgnutls30/bionic-updates,bionic-security,now 3.5.18-1ubuntu1.1 amd64 [installed] libgpg-error0/bionic,now 1.27-6 amd64 [installed] libhogweed4/bionic,now 3.4-1 amd64 [installed] libidn2-0/bionic,now 2.0.4-1.1build2 amd64 [installed,upgradable to: 2.0.4-1.1ubuntu0.2] liblz4-1/bionic,now 0.0~r131-2ubuntu3 amd64 [installed] liblzma5/bionic,now 5.2.2-1.3 amd64 [installed] libmount1/now 2.31.1-0.4ubuntu3.3 amd64 [installed,upgradable to: 2.31.1-0.4ubuntu3.4] libncurses5/bionic-updates,now 6.1-1ubuntu1.18.04 amd64 [installed] libncursesw5/bionic-updates,now 6.1-1ubuntu1.18.04 amd64 [installed] libnettle6/bionic,now 3.4-1 amd64 [installed] libnorm1/bionic,now 1.5r6+dfsg1-6 amd64 [installed,automatic] libp11-kit0/bionic,now 0.23.9-2 amd64 [installed] libpam-modules/bionic-updates,now 1.1.8-3.6ubuntu2.18.04.1 amd64 [installed] libpam-modules-bin/bionic-updates,now 1.1.8-3.6ubuntu2.18.04.1 amd64 [installed] libpam-runtime/bionic-updates,now 1.1.8-3.6ubuntu2.18.04.1 all [installed] libpam0g/bionic-updates,now 1.1.8-3.6ubuntu2.18.04.1 amd64 [installed] libpcre3/bionic,now 2:8.39-9 amd64 [installed] libpgm-5.2-0/bionic,now 5.2.122~dfsg-2 amd64 [installed,automatic] libprocps6/bionic-security,now 2:3.3.12-3ubuntu1.1 amd64 [installed,upgradable to: 2:3.3.12-3ubuntu1.2] libpsl5/bionic,now 0.19.1-5build1 amd64 [installed,automatic] libseccomp2/bionic-updates,bionic-security,now 2.4.1-0ubuntu0.18.04.2 amd64 [installed] libselinux1/bionic,now 2.7-2build2 amd64 [installed] libsemanage-common/bionic,now 2.7-2build2 all [installed] libsemanage1/bionic,now 2.7-2build2 amd64 [installed] libsepol1/bionic,now 2.7-1 amd64 [installed] libsmartcols1/now 2.31.1-0.4ubuntu3.3 amd64 [installed,upgradable to: 2.31.1-0.4ubuntu3.4] libsodium23/bionic,now 1.0.16-2 amd64 [installed,automatic] libss2/now 1.44.1-1ubuntu1.1 amd64 [installed,upgradable to: 1.44.1-1ubuntu1.2] libssl1.1/now 1.1.1-1ubuntu2.1~18.04.4 amd64 [installed,upgradable to: 1.1.1-1ubuntu2.1~18.04.5] libstdc++6/now 8.3.0-6ubuntu1~18.04 amd64 [installed,upgradable to: 8.3.0-6ubuntu1~18.04.1] libsystemd0/now 237-3ubuntu10.22 amd64 [installed,upgradable to: 237-3ubuntu10.31] libtasn1-6/bionic,now 4.13-2 amd64 [installed] libtinfo5/bionic-updates,now 6.1-1ubuntu1.18.04 amd64 [installed] libudev1/now 237-3ubuntu10.22 amd64 [installed,upgradable to: 237-3ubuntu10.31] libunistring2/bionic-updates,now 0.9.9-0ubuntu2 amd64 [installed] libuuid1/now 2.31.1-0.4ubuntu3.3 amd64 [installed,upgradable to: 2.31.1-0.4ubuntu3.4] libzmq3-dev/bionic-updates,bionic-security,now 4.2.5-1ubuntu0.2 amd64 [installed] libzmq5/bionic-updates,bionic-security,now 4.2.5-1ubuntu0.2 amd64 [installed,automatic] libzstd1/bionic,now 1.3.3+dfsg-2ubuntu1 amd64 [installed,upgradable to: 1.3.3+dfsg-2ubuntu1.1] locales/bionic,now 2.27-3ubuntu1 all [installed] login/bionic-updates,now 1:4.5-1ubuntu2 amd64 [installed] lsb-base/bionic,now 9.20170808ubuntu1 all [installed] mawk/bionic,now 1.3.3-17ubuntu3 amd64 [installed] mount/now 2.31.1-0.4ubuntu3.3 amd64 [installed,upgradable to: 2.31.1-0.4ubuntu3.4] ncurses-base/bionic-updates,now 6.1-1ubuntu1.18.04 all [installed] ncurses-bin/bionic-updates,now 6.1-1ubuntu1.18.04 amd64 [installed] openssl/now 1.1.1-1ubuntu2.1~18.04.4 amd64 [installed,upgradable to: 1.1.1-1ubuntu2.1~18.04.5] passwd/bionic-updates,now 1:4.5-1ubuntu2 amd64 [installed] perl-base/bionic-updates,bionic-security,now 5.26.1-6ubuntu0.3 amd64 [installed] procps/bionic-security,now 2:3.3.12-3ubuntu1.1 amd64 [installed,upgradable to: 2:3.3.12-3ubuntu1.2] run-one/bionic,now 1.17-0ubuntu1 all [installed] sed/bionic,now 4.4-2 amd64 [installed] sensible-utils/bionic,now 0.0.12 all [installed] sudo/bionic-updates,bionic-security,now 1.8.21p2-3ubuntu1.1 amd64 [installed] sysvinit-utils/bionic,now 2.88dsf-59.10ubuntu1 amd64 [installed] tar/bionic-updates,now 1.29b-2ubuntu0.1 amd64 [installed] ubuntu-keyring/bionic-updates,now 2018.09.18.1~18.04.0 all [installed] util-linux/now 2.31.1-0.4ubuntu3.3 amd64 [installed,upgradable to: 2.31.1-0.4ubuntu3.4] wget/bionic-updates,bionic-security,now 1.19.4-1ubuntu2.2 amd64 [installed] zlib1g/bionic,now 1:1.2.11.dfsg-0ubuntu2 amd64 [installed]
RUN conda list packages in environment at /opt/conda:
Name Version Build Channel _libgcc_mutex 0.1 main defaults alembic 1.3.0 py_0 conda-forge async_generator 1.10 py_0 conda-forge attrs 19.3.0 py_0 conda-forge backcall 0.1.0 py_0 conda-forge bleach 3.1.0 py_0 conda-forge blinker 1.4 py_1 conda-forge bzip2 1.0.8 h516909a_1 conda-forge ca-certificates 2019.9.11 hecc5488_0 conda-forge certifi 2019.9.11 py37_0 conda-forge certipy 0.1.3 py_0 conda-forge cffi 1.13.2 py37h8022711_0 conda-forge chardet 3.0.4 py37_1003 conda-forge conda 4.7.12 py37_0 conda-forge conda-package-handling 1.6.0 py37h516909a_0 conda-forge configurable-http-proxy 1.3.0 0 conda-forge cryptography 2.8 py37h72c5cf5_0 conda-forge curl 7.65.3 hf8cf82a_0 conda-forge decorator 4.4.1 py_0 conda-forge defusedxml 0.6.0 py_0 conda-forge entrypoints 0.3 py37_1000 conda-forge expat 2.2.5 he1b5a44_1004 conda-forge gettext 0.19.8.1 hc5be6a0_1002 conda-forge git 2.23.0 pl526hce37bd2_2 conda-forge go 1.12.5 hb30d042_1 conda-forge go-nocgo 1.12.5 h8b2e17f_1 conda-forge go-nocgo_linux-64 1.12.5 h03773dc_1 conda-forge icu 64.2 he1b5a44_1 conda-forge idna 2.8 py37_1000 conda-forge importlib_metadata 0.23 py37_0 conda-forge ipykernel 5.1.3 py37h5ca1d4c_0 conda-forge ipython 7.9.0 py37h5ca1d4c_0 conda-forge ipython_genutils 0.2.0 py_1 conda-forge jedi 0.15.1 py37_0 conda-forge jinja2 2.10.3 py_0 conda-forge json5 0.8.5 py_0 conda-forge jsonschema 3.1.1 py37_0 conda-forge jupyter_client 5.3.3 py37_1 conda-forge jupyter_core 4.5.0 py_0 conda-forge jupyterhub 1.0.0 py37_0 conda-forge jupyterlab 1.2.1 py_0 conda-forge jupyterlab_server 1.0.6 py_0 conda-forge krb5 1.16.3 h05b26f9_1001 conda-forge libcurl 7.65.3 hda55be3_0 conda-forge libedit 3.1.20170329 hf8c457e_1001 conda-forge libffi 3.2.1 he1b5a44_1006 conda-forge libgcc-ng 9.1.0 hdf63c60_0 defaults libiconv 1.15 h516909a_1005 conda-forge libsodium 1.0.17 h516909a_0 conda-forge libssh2 1.8.2 h22169c7_2 conda-forge libstdcxx-ng 9.1.0 hdf63c60_0 defaults libuv 1.33.1 h516909a_0 conda-forge mako 1.1.0 py_0 conda-forge markupsafe 1.1.1 py37h516909a_0 conda-forge mistune 0.8.4 py37h516909a_1000 conda-forge more-itertools 7.2.0 py_0 conda-forge nbconvert 5.6.1 py37_0 conda-forge nbformat 4.4.0 py_1 conda-forge ncurses 6.1 hf484d3e_1002 conda-forge nodejs 12.13.0 h10a4023_0 conda-forge notebook 6.0.0 py37_0 conda-forge oauthlib 3.0.1 py_0 conda-forge openssl 1.1.1d h516909a_0 conda-forge pamela 1.0.0 py_0 conda-forge pandoc 2.7.3 0 conda-forge pandocfilters 1.4.2 py_1 conda-forge parso 0.5.1 py_0 conda-forge pcre 8.43 he1b5a44_0 conda-forge perl 5.26.2 h516909a_1006 conda-forge pexpect 4.7.0 py37_0 conda-forge pickleshare 0.7.5 py37_1000 conda-forge pip 19.3.1 py37_0 conda-forge prometheus_client 0.7.1 py_0 conda-forge prompt_toolkit 2.0.10 py_0 conda-forge ptyprocess 0.6.0 py_1001 conda-forge pycosat 0.6.3 py37h516909a_1002 conda-forge pycparser 2.19 py37_1 conda-forge pycurl 7.43.0.3 py37h16ce93b_1 conda-forge pygments 2.4.2 py_0 conda-forge pyjwt 1.7.1 py_0 conda-forge pyopenssl 19.0.0 py37_0 conda-forge pyrsistent 0.15.5 py37h516909a_0 conda-forge pysocks 1.7.1 py37_0 conda-forge python 3.7.3 h33d41f4_1 conda-forge python-dateutil 2.8.1 py_0 conda-forge python-editor 1.0.4 py_0 conda-forge pyzmq 18.1.0 py37h1768529_0 conda-forge readline 8.0 hf8c457e_0 conda-forge requests 2.22.0 py37_1 conda-forge ruamel_yaml 0.15.71 py37h14c3975_1000 conda-forge send2trash 1.5.0 py_0 conda-forge setuptools 41.6.0 py37_1 conda-forge six 1.13.0 py37_0 conda-forge sqlalchemy 1.3.10 py37h516909a_0 conda-forge sqlite 3.30.1 hcee41ef_0 conda-forge terminado 0.8.2 py37_0 conda-forge testpath 0.4.4 py_0 conda-forge tini 0.18.0 h14c3975_1001 conda-forge tk 8.6.9 hed695b0_1003 conda-forge tornado 6.0.3 py37h516909a_0 conda-forge tqdm 4.37.0 py_0 conda-forge traitlets 4.3.3 py37_0 conda-forge urllib3 1.25.6 py37_0 conda-forge wcwidth 0.1.7 py_1 conda-forge webencodings 0.5.1 py_1 conda-forge wheel 0.33.6 py37_0 conda-forge xz 5.2.4 h14c3975_1001 conda-forge yaml 0.1.7 h14c3975_1001 conda-forge zeromq 4.3.2 he1b5a44_2 conda-forge zipp 0.6.0 py_0 conda-forge zlib 1.2.11 h516909a_1006 conda-forge
RUN pip list Package Version
alembic 1.3.0 async-generator 1.10 attrs 19.3.0 backcall 0.1.0 bleach 3.1.0 blinker 1.4 certifi 2019.9.11 certipy 0.1.3 cffi 1.13.2 chardet 3.0.4 conda 4.7.12 conda-package-handling 1.6.0 cryptography 2.8 decorator 4.4.1 defusedxml 0.6.0 entrypoints 0.3 idna 2.8 importlib-metadata 0.23 ipykernel 5.1.3 ipython 7.9.0 ipython-genutils 0.2.0 jedi 0.15.1 Jinja2 2.10.3 json5 0.8.5 jsonschema 3.1.1 jupyter-client 5.3.3 jupyter-core 4.5.0 jupyterhub 1.0.0 jupyterlab 1.2.1 jupyterlab-server 1.0.6 Mako 1.1.0 MarkupSafe 1.1.1 mistune 0.8.4 more-itertools 7.2.0 nbconvert 5.6.1 nbformat 4.4.0 notebook 6.0.0 oauthlib 3.0.1 pamela 1.0.0 pandocfilters 1.4.2 parso 0.5.1 pexpect 4.7.0 pickleshare 0.7.5 pip 19.3.1 prometheus-client 0.7.1 prompt-toolkit 2.0.10 ptyprocess 0.6.0 pycosat 0.6.3 pycparser 2.19 pycurl 7.43.0.3 Pygments 2.4.2 PyJWT 1.7.1 pyOpenSSL 19.0.0 pyrsistent 0.15.5 PySocks 1.7.1 python-dateutil 2.8.1 python-editor 1.0.4 pyzmq 18.1.0 requests 2.22.0 ruamel-yaml 0.15.71 Send2Trash 1.5.0 setuptools 41.6.0.post20191101 six 1.13.0 SQLAlchemy 1.3.10 terminado 0.8.2 testpath 0.4.4 tornado 6.0.3 tqdm 4.37.0 traitlets 4.3.3 urllib3 1.25.6 wcwidth 0.1.7 webencodings 0.5.1 wheel 0.33.6 zipp 0.6.0
I believe you need CGO_ENABLED
to work. If CGO_ENABLED=0
, then you will run into this problem.
I used the following and it worked for me:
FROM golang:1.13-alpine as goapps
ENV CGO_ENABLED=1\
GOOS=linux
RUN apk update \
&& apk add --no-cache ca-certificates\
git \
gcc \
g++ \
pkgconfig \
linux-headers \
zeromq \
zeromq-dev \
&& rm -rf /var/cache/apk/*
RUN go get github.com/gopherdata/gophernotes
WORKDIR /go/src/github.com/gopherdata/gophernotes
RUN GOOS=linux go build -a -installsuffix cgo -o gophernotes
from alpine
ARG NB_USER="jovyan"
ARG NB_UID="1000"
ARG NB_GID="1000"
ENV CGO_ENABLED=0\
GOOS=linux\
NB_USER=$NB_USER\
NB_UID=$NB_UID\
NB_GID=$NB_GID\
GOPHERNOTESPATH="/home/$NB_USER/.local/share/jupyter/kernels/gophernotes/"
RUN apk update \\
&& apk upgrade --update-cache --available \
&& apk add --no-cache \
bash \
build-base \
ca-certificates \
curl \
python3 \
python3-dev\
git \
linux-headers \
zeromq \
zeromq-dev \
&& pip3 install --upgrade pip \
&& pip3 install jupyter jupyterlab \
&& apk del build-base python3-dev linux-headers zeromq-dev \
&& rm -rf /var/cache/apk/*
COPY --from=goapps /go/src/github.com/gopherdata/gophernotes/gophernotes /usr/local/bin/gophernotes
COPY --from=goapps /go/src/github.com/gopherdata/gophernotes/kernel/* $GOPHERNOTESPATH
COPY start-notebook.sh /usr/local/bin
COPY start-singleuser.sh /usr/local/bin
RUN mkdir -p $GOPHERNOTESPATH \
&& sed "s|gophernotes|/usr/local/bin/gophernotes|" < ${GOPHERNOTESPATH}kernel.json.in > ${GOPHERNOTESPATH}kernel.json \
&& addgroup -S -g $NB_GID $NB_USER \
&& adduser --system $NB_USER --uid $NB_UID --ingroup $NB_USER \
&& chown -R $NB_USER:$NB_USER /home/$NB_USER/.local
USER $NB_UID
WORKDIR /workspace
VOLUME [ "/workspace" ]
EXPOSE 8888
ENTRYPOINT ["/usr/local/bin/start-notebook.sh"]
Getting error from pebbe as dependency of gophernotes. I've raised an issue with gophernotes, but it might be it's more something to do with pebbe: https://github.com/gopherdata/gophernotes/issues/188 Installation under alpine linux worked for me - not sure what I'm missing for Debian/Ubuntu
During gophernotes install via Debian/Ubuntu dockerfile I get error:![image](https://user-images.githubusercontent.com/3856578/69476098-48429000-0dcd-11ea-893b-aa0a5992e7e3.png)
Dockerfile (based on Ubuntu/jupyterlab) with failing example Trying to go install pebbe or go install gophernotes fails: