Incomplete illumination correction for slides scanned on CV7K

[tstoeger]

stat_values.count in the illumination correction statistics does indicate that not all images were sampled, when trying to process a microscopic slide scanned on cv7k

the number of sampled images suggests that only images with site <1000 were used , e.g.: share7 :\Data\Users\RNAFish\IndividualExperiments\150818-ChallengeIBrainWithSlides

Possibly this relates to the expectation of the nomenclature of cv7k, which usually uses three digits (with leading zeros) for sites, except if the number of sites is >999. In the latter case there are 4 digits, where the rest of the filename follows the ordinary convention / regexp

[ewiger]

Filename example is 150817-Cytoo-SimulateFastScan_A04_T0001F1000L01A01Z01C01.png

[tstoeger]

indeed; also see https://github.com/pelkmanslab/PelkmansLibrary/pull/8

[ewiger]

Thanks! I have accepted the merge request. We can test this fix tomorrow.

[tstoeger]

Test worked; results as expected; absolutely no problem anymore