peterjc galaxy_blast issues

peterjc / galaxy_blast

Galaxy wrappers for NCBI BLAST+ and related BLAST tools.

76 stars 70 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Add bio.tools for ncbi_blast_plus

#171 rlibouba opened 3 weeks ago
0
Add bio.tools for make_nr

#170 rlibouba opened 3 weeks ago
0
Add biotools blastxml to top descr

#169 rlibouba opened 3 weeks ago
0
Add bio.tools for Blast_rbh

#168 rlibouba opened 3 weeks ago
0
Add bio.tools for Blast2GO

#167 rlibouba opened 3 weeks ago
1
Bump actions/download-artifact from 3 to 4.1.7 in /.github/workflows

#166 dependabot[bot] closed 2 months ago
0
RPStblastn subject defline(s) option not taken into account

#165 marieBvr opened 7 months ago
3
Add genomes on server functionality

#164 elischberg closed 9 months ago
14
Add genomes on server functionality

#163 elischberg closed 9 months ago
0
fix blast requirement

#162 bernt-matthias opened 1 year ago
3
get_species_taxids: fix sed

#161 bernt-matthias closed 1 year ago
3
NCBI BLAST 2.15.0 makes parallelism extension redundant

#160 peterjc opened 1 year ago
0
No more Galaxy mailing list

#159 peterjc closed 1 year ago
0
Update GitHub CI as per IUC repository

#158 peterjc closed 1 year ago
2
Wrap NCBI BLAST+ 2.14.1

#157 peterjc closed 1 year ago
16
NCBI BLAST+ blastn overflow error with NCBI NT 2023-09-01 Nucleotide BLAST database

#156 kysrpex closed 1 year ago
6
Add metadata column to tabular output

#155 bgruening opened 1 year ago
0
blast2go.loc.sample file not available

#154 gallardoalba opened 1 year ago
2
fix slash workflow syntax

#153 bernt-matthias closed 1 year ago
1
Restore the tool test skip entries from TravisCI era

#152 peterjc closed 1 year ago
4
Disable slashcommand and flake requirements

#151 bernt-matthias closed 1 year ago
2
Manifests can point at local test-data folders now

#150 peterjc opened 1 year ago
3
GitHub actions

#149 bernt-matthias closed 1 year ago
15
Topic/test bump

#148 bernt-matthias closed 1 year ago
0
Skip query hits above user-defined threshold

#147 nuno-agostinho opened 2 years ago
1
Latest Blast

#146 Sivanandan opened 2 years ago
3
TaxID Changes to Allow higher-level IDs

#145 BeaverThing closed 1 year ago
7
update ncbi_blastn_wrapper.xml - window_size

#144 mthang closed 2 years ago
5
Window_size bug

#143 mthang closed 2 years ago
2
Add explicit Python requirements to tools that appear to require it

#142 natefoo closed 2 years ago
4
[help] Huge Memory Consumption For blastn

#141 hmyh1202 closed 1 year ago
2
Replace TravisCI for testing

#140 peterjc closed 1 year ago
2
Problem with Blast2GO wrapper

#139 gallardoalba opened 3 years ago
4
Ignore flake8 B902 blind except Exception: statement

#138 peterjc closed 3 years ago
0
fix make_nr if no dups exist

#137 bernt-matthias closed 3 years ago
8
blast improvements

#136 bernt-matthias closed 2 years ago
16
make blast dbs non-optional

#135 bernt-matthias closed 4 years ago
6
NCBI BLAST+ v2.10.1 with DB v5 support

#134 peterjc closed 4 years ago
3
BLAST+ v2.9.0

#133 peterjc closed 4 years ago
5
Test multiple DB in blastdbcmd -info

#132 peterjc closed 4 years ago
0
Adopt @TOOL_VERSION@+galaxy@VERSION_SUFFIX@

#131 peterjc closed 4 years ago
0
Support history DB in blastdbcmd wrappers

#130 peterjc closed 4 years ago
3
Tool Shed based datatype packages now obsolete

#129 peterjc closed 4 years ago
0
TravisCI: Misc updates

#128 peterjc closed 4 years ago
1
Blastcmd adaptability

#127 Frahiriart closed 4 years ago
5
[WIP] support for taxid filtering

#126 hexylena closed 3 years ago
4
Expand blastdbcmd wrapper to accept DB from history

#125 peterjc closed 4 years ago
6
Support for BLAST DB v5

#124 peterjc opened 4 years ago
2
Update to 2.10.1

#123 abretaud closed 4 years ago
13
makeblastdb file output appears to be too big

#122 balags1 opened 4 years ago
5