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phac-nml / biohansel

Rapidly subtype microbial genomes using single-nucleotide variant (SNV) subtyping schemes
Apache License 2.0
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metadata file type #108

Closed dankein closed 5 years ago

dankein commented 5 years ago

I noticed an error when you use .txt extension on the metadata file. I believe it will accept .tab and .tsv - and I don't think it's specified int he documentation.

glabbe commented 5 years ago

Thanks for pointing that out Dan, will look into fixing it

DarianHole commented 5 years ago

This would be a documentation enhancement correct?

I know the read me needs to be updated a decent bit (Monday's task) and I'll update the RTD now for it.

I've also added a line into the help command of biohansel in #109 and I'll take a quick look at the galaxy wrapper in the meantime.

glabbe commented 5 years ago

Thanks @DarianHole , yes that would be a documentation enhancement

DarianHole commented 5 years ago

I believe this had been adequately addressed in PR #111

If not, please re-open or let me know and I'll add more where I can. The changes will be seen in the next release or if the development branch is installed