Update default coverage values and clarify help statement

phac-nml / biohansel

Rapidly subtype microbial genomes using single-nucleotide variant (SNV) subtyping schemes

Apache License 2.0

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Update default coverage values and clarify help statement #114

Closed glabbe closed 4 years ago

glabbe commented 4 years ago

Hi @peterk87, I have made 3 small changes, one to fix the default max_kmer_value as described in issue #101 , another to fix an apparent typo in the low coverage warning value for SE, and the last one to clarify the help statement when using a fasta file as input. Please let me know if this looks ok.