Closed jrober84 closed 3 years ago
Hi @jrober84,
It looks like this pull-request is has been made against the phac-nml/biohansel master
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Thanks again for your contribution!
This update is to make some minor modifications to BioHansel to be more compatible with amplicon based SARS-COV-2 data by introducing the min-kmer-frac parameter which works in combination with the min-kmer-cov parameter to ignore k-mers present in a sample which are less than the defined percentage set by the program with a default of 0.05. Additionally, the max-kmer-cov has been increased to not cause conflicts with high covered regions being ignored. The kmer report has also removed the error message field since this adds a lot of extra repeated data for these reports which adds up for larger sample pools.