Closed peterk87 closed 3 years ago
This is a PR to prep version 2.6.0 release of BioHansel.
aho_corasick/__init__.py
utils.py
check_total_kmers
bio_hansel.parsers._parse_fasta
Bio.SeqIO.FastaIO.SimpleFastaParser
This is a PR to prep version 2.6.0 release of BioHansel.
Changes
aho_corasick/__init__.py
toutils.py
)check_total_kmers
call to right after parsing of CLI argsbio_hansel.parsers._parse_fasta
with BioPython'sBio.SeqIO.FastaIO.SimpleFastaParser
; forcing uppercase of sequence