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phac-nml
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biohansel
Rapidly subtype microbial genomes using single-nucleotide variant (SNV) subtyping schemes
Apache License 2.0
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7
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Deploy to PyPI on release
#96
peterk87
closed
5 years ago
0
Update New Release to Pypi
#95
DarianHole
closed
5 years ago
1
Major upgrade
#94
Takadonet
closed
5 years ago
0
version and author update
#93
DarianHole
closed
5 years ago
0
update enteritidis scheme and typhimurium scheme added
#92
DarianHole
closed
5 years ago
0
Degenerate Base Expansion addition
#91
DarianHole
closed
5 years ago
3
Fix to issue 88 with new QC Check
#90
DarianHole
closed
5 years ago
7
update enteritidis scheme
#89
DarianHole
closed
5 years ago
0
Not failing QC with inconsistent results in first hierarchical level
#88
DarianHole
closed
5 years ago
3
small dev bugfix
#87
DarianHole
closed
5 years ago
0
New Schemes Ready
#86
DarianHole
closed
5 years ago
5
Allow levels past 9
#85
DarianHole
closed
5 years ago
6
Create release on merge to master and deploy to PyPI
#84
peterk87
closed
5 years ago
0
Create azure-pipelines.yml
#83
peterk87
closed
3 years ago
3
Changed 'tile' to 'kmer' to create consistency
#82
DarianHole
closed
5 years ago
0
if no subtype output '#N/A'
#81
DarianHole
closed
5 years ago
0
Update README.rst
#80
DarianHole
closed
5 years ago
0
Revert "NA subtype default output"
#79
peterk87
closed
5 years ago
0
NA subtype default output
#78
DarianHole
closed
5 years ago
0
Match results orders tiles as positive first
#77
DarianHole
closed
5 years ago
0
Sort tiles
#76
DarianHole
closed
5 years ago
0
Readthedocs
#75
DarianHole
closed
5 years ago
0
Readthedocs
#74
DarianHole
closed
5 years ago
0
Readme update
#73
DarianHole
closed
5 years ago
0
Re-order the match results to put the positive tiles matches at the top of the list
#72
glabbe
closed
5 years ago
1
fixing fasta lower case no result bug. added a unit test for subtype_contigs function
#71
kbessonov1984
closed
5 years ago
0
toupper case bug fix in inputs
#70
kbessonov1984
closed
5 years ago
2
When no subtype results, report "NA" in subtype field
#69
peterk87
closed
5 years ago
2
Long form reporting of multiple subtypes for a sample
#68
peterk87
opened
5 years ago
0
Collapse mixed subtype results to highest resolution discordant subtypes
#67
peterk87
opened
5 years ago
0
Bionumerics CSV output option
#66
peterk87
closed
5 years ago
1
v2.1.1 - Fix command-line parameter and lower-case seq issues
#65
peterk87
closed
5 years ago
3
Readthedocs
#64
glabbe
closed
5 years ago
1
Command-line arg variable name and SubtypingParams instance variable name synchronization
#63
peterk87
opened
5 years ago
1
Update utils.py
#62
glabbe
closed
5 years ago
0
--min-kmer-freq is no longer adjustable
#61
sond468
closed
5 years ago
0
Degenerate "probe" sequence expansion
#60
peterk87
closed
5 years ago
8
Output list of tiles that didn't match
#59
dankein
opened
5 years ago
4
Scheme creation/tree visualization
#58
gcttong
closed
3 years ago
1
Scheme creation/new changes
#57
gcttong
closed
6 years ago
0
Scheme creation/new changes
#56
gcttong
closed
6 years ago
0
Scheme creation/tests
#55
gcttong
closed
6 years ago
0
Scheme creation/initial
#54
gcttong
closed
6 years ago
0
Release v2.1.0
#53
peterk87
closed
6 years ago
0
Scheme creation
#52
peterk87
opened
6 years ago
1
Fix empty output files when no targets are found in inputs
#51
peterk87
closed
6 years ago
1
Link to docs in readme
#50
peterk87
closed
5 years ago
1
Empty files when no targets are found
#49
peterk87
closed
6 years ago
0
Snv schemescript
#48
gcttong
closed
5 years ago
0
Shorten QC messages
#47
peterk87
closed
6 years ago
2
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