search

phac-nml / mob-suite

MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies
Apache License 2.0
118 stars 31 forks source link

RuntimeError: Cannot cythonize without Cython installed. #138

Closed Xian220 closed 1 year ago

Xian220 commented 1 year ago

An error (RuntimeError: Cannot cythonize without Cython installed.) occurs when running 'python setup.py install'. But i have already installed cython.

Details are as follows.

File "/tmp/easy_install-9hl8cyvt/pandas-1.0.5/setup.py", line 757, in File "/tmp/easy_install-9hl8cyvt/pandas-1.0.5/setup.py", line 515, in maybe_cythonize RuntimeError: Cannot cythonize without Cython installed.

(base) test@jsy:/media/test/JSY_SRT2021/LTJ/mobsuite-3.1.4/mob-suite$ which cython /usr/bin/cython

jrober84 commented 1 year ago

How did you install mob-suite? Is the issue reproducible in a new conda environment?

jrober84 commented 1 year ago

closing due to inactivity