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phac-nml / mob-suite

MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies
Apache License 2.0
111 stars 31 forks source link

Something went wrong with database download or unpackingCheck MOB-Suite databases directory and your Internet connection #168

Open kenken86 opened 1 week ago

kenken86 commented 1 week ago

2024-07-01 08:17:37,478 INFO: MOB-recon v. 2.0.0 [in /gpfs01/home/svzkp2/miniconda3/envs/mob_suite_env/lib/python3.6/site-packages/mob_suite/mob_recon.py:316] 2024-07-01 08:17:37,510 INFO: Processing fasta file SRR28977509_scaffolds.fasta [in /gpfs01/home/svzkp2/miniconda3/envs/mob_suite_env/lib/python3.6/site-packages/mob_suite/mob_recon.py:331] 2024-07-01 08:17:37,510 INFO: Analysis directory /gpfs01/home/svzkp2/sra_project/fastq_files/mob [in /gpfs01/home/svzkp2/miniconda3/envs/mob_suite_env/lib/python3.6/site-packages/mob_suite/mob_recon.py:332] 2024-07-01 08:17:37,512 INFO: MOB-databases need to be initialized, this will take some time [in /gpfs01/home/svzkp2/miniconda3/envs/mob_suite_env/lib/python3.6/site-packages/mob_suite/utils.py:66] 2024-07-01 08:17:37,884 INFO: Return code 255 [in /gpfs01/home/svzkp2/miniconda3/envs/mob_suite_env/lib/python3.6/site-packages/mob_suite/utils.py:75] 2024-07-01 08:17:37,884 ERROR: Something went wrong with database download or unpackingCheck MOB-Suite databases directory and your Internet connection. [in /gpfs01/home/svzkp2/miniconda3/envs/mob_suite_env/lib/python3.6/site-packages/mob_suite/utils.py:79]

/gpfs01/home/svzkp2/sra_project/fastq_files/fasta 2024-07-01 08:17:37,825 INFO: Database directory folder already exists at /gpfs01/home/svzkp2/miniconda3/envs/mob_suite_env/lib/python3.6/site-packages/mob_suite/databases [in /gpfs01/home/svzkp2/miniconda3/envs/mob_suite_env/lib/python3.6/site-packages/mob_suite/mob_init.py:128] 2024-07-01 08:17:37,827 INFO: Placed lock file at /gpfs01/home/svzkp2/miniconda3/envs/mob_suite_env/lib/python3.6/site-packages/mob_suite/databases/.lock [in /gpfs01/home/svzkp2/miniconda3/envs/mob_suite_env/lib/python3.6/site-packages/mob_suite/mob_init.py:139] 2024-07-01 08:17:37,827 INFO: Initializing databases...this will take some time [in /gpfs01/home/svzkp2/miniconda3/envs/mob_suite_env/lib/python3.6/site-packages/mob_suite/mob_init.py:162] 2024-07-01 08:17:37,827 INFO: Downloading databases...this will take some time [in /gpfs01/home/svzkp2/miniconda3/envs/mob_suite_env/lib/python3.6/site-packages/mob_suite/mob_init.py:175] 2024-07-01 08:17:37,827 INFO: Trying mirror https://share.corefacility.ca/index.php/s/oeufkw5HyKz0X5I/download [in /gpfs01/home/svzkp2/miniconda3/envs/mob_suite_env/lib/python3.6/site-packages/mob_suite/mob_init.py:179] % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed

0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 02024-07-01 08:17:37,857 ERROR: Download failed with error (6, 'Could not resolve host: share.corefacility.ca'). Removing lock file [in /gpfs01/home/svzkp2/miniconda3/envs/mob_suite_env/lib/python3.6/site-packages/mob_suite/mob_init.py:182]