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phac-nml / mob-suite

MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies
Apache License 2.0
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Add sample label to outputs from MOB-typer and MOB-recon #45

Closed jrober84 closed 4 years ago

jrober84 commented 4 years ago

Right now the file ID is all that is reported in either the contig report or MOB-typer reports. This makes aggregating results irritating since you need to add in your sample label by some other means. Adding a new command line parameter --sample_name and having that added as a column to each of the reports would solve this hassle. In the same vein, we should have a file name prefix flag for the fasta files written by MOB-recon as an option for users so that they have control over the output naming. This is not a high priority improvement but should be combined with issue#30

jrober84 commented 4 years ago

MOB-suite 3.0.0 now allows for sample id's to be incorporated