pharmaverse / rpharma-2024-ADaM-workshop

Repo for the ADaM workshop at R/pharma 2024

https://pharmaverse.github.io/rpharma-2024-ADaM-workshop/

Apache License 2.0

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Some Notes #1

Open bms63 opened 2 months ago

bms63 commented 2 months ago

Pre-requisites for Workshop

Installing Packages Best Practices

Always update to the latest packages - Select All and update
We probably won't run into this with the container - but if we do

Slack Channel

Encourage attendees join the slack channel -
Not a cure-all, but what we got!

Workspace

Check on initial script running okay
Can workspaces be re-populated with updated scripts if bugs are found

Workshop is Record

Get stuck can always come back later

Outline

Introduction
- Set up of all the packages
ADSL (@bms63 )
- Spec introduction
- Using metacore/metatools to do numeric
- Running all functions/code
- We need to select a few to go into detail about
- xportr to create the xpt
Break for 5 minutes
ADVS (@Fanny-Gautier )
- Need to develop spec for ADVS
- Spec introduction
- Using metacore/metatools to do numeric, etc
- Running all functions/code
- We need to select a few to go into detail about
- xportr to create the xpt
Brief intro to extension packages

Todos

[ ] Set up excel file with ADSL, ADVS - Phuse MS Teams (@bms63)
[ ] Populate ADVS (@Fanny-Gautier)
[ ] Agenda for the website slides (@bms63)

bms63 commented 2 months ago

September 16th 2024

Some notes

Issues with differences in SDTM IG. Need to state what IGs we are using
Specs between companies are very different - whoa
Sticking with P21 Specs - clean up ADSL and leave ADLB as an example
We need to be prepared for folks to fixate on the specs, but we don't want to focus on this - the workshop is really for admiral

To Ponder

How much do we use metacore/metatools? I was just thinking for numeric variables, dropping variables, labels, and using xportr for lengths, types, etc. Keep super simple!!
How much do we present on admiralpeds?
What slides to we produce versus exercises?
How does someone get the exercises and work on them?
How does someone get the solutions if they get stuck?

Actions

[ ] @bms63 to clean up ADSL in specs
[ ] @bms63 get ADSL working with code and specs

bms63 commented 2 months ago

@manciniedoardo and @Fanny-Gautier - some minor notes. Feel free to drop thoughts, concerns, etc in here