phbradley tcr-dist issues

phbradley / tcr-dist

Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)

MIT License

79 stars 36 forks source link

issues

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Newest Most commented Recently updated Oldest Least commented Least recently updated

statistical method for testing degree of clustering/distance between groups of TCRs?

#45 dxl3742 opened 3 months ago
0
Apply tcr-dist on amino acid sequences

#44 rx-li opened 11 months ago
1
Losing Clones

#43 TheRaspberryFox opened 1 year ago
0
Issue with run_basic_analysis

#42 TejasMenon opened 1 year ago
0
usage with mixcr files

#41 guillemsanchezsanchez1996 opened 2 years ago
8
setup_gammadelta_db.py issue

#40 crushseven-7 closed 3 years ago
2
Estimation of TCRdiv

#39 bravib closed 4 years ago
8
Bad CPU type

#38 poorvam opened 4 years ago
4
make_10x_clones_file.py issue

#37 crushseven-7 closed 4 years ago
2
text format cluster output for make_tall_trees.py

#36 xf78 opened 4 years ago
2
make_really_tall_trees.py script always running

#35 xf78 closed 4 years ago
1
merge tenx_io branch to master

#34 phbradley closed 4 years ago
0
How to pair the alpha and beta chain reads from one TCR

#33 zhangbaifeng opened 5 years ago
0
AssertionError

#32 XYZuo opened 5 years ago
4
How to use tcr-dist with only V gene-level information?

#31 gchoonoo opened 5 years ago
6
Amino Acid sequence inputs

#30 sidhomj closed 5 years ago
7
Validation Data Missing Epitope Label

#29 sidhomj closed 5 years ago
2
Single Chain parsed_seq Input Generating Blank Output File

#28 cajames2 closed 6 years ago
1
Fix NCBI BLAST download URLs.

#27 pansapiens closed 6 years ago
0
Fix motif fig

#26 jeremycfd closed 6 years ago
0
minor change to cdr3 distribution plots

#25 jeremycfd closed 6 years ago
0
API - nothing should have changed in master

#24 agartland closed 6 years ago
1
Move to new organization for database files

#23 phbradley closed 6 years ago
0
improvements to error and log reporting

#22 jeremycfd closed 6 years ago
0
Align len

#21 jeremycfd closed 6 years ago
0
Limitations in detecting out of frame TCRs

#20 jeremycfd opened 6 years ago
3
Track the clonality of out of frame CDR3s

#19 jeremycfd opened 6 years ago
2
outputting kPCA info to log

#18 jeremycfd closed 6 years ago
0
outputting kPCA info to log

#17 jeremycfd closed 6 years ago
0
Feature request: save PCs from kPCA to log

#16 jeremycfd closed 6 years ago
1
Add universal newline support

#15 jeremycfd closed 6 years ago
2
File converter

#14 jeremycfd closed 6 years ago
0
Problems determining best_gappos

#13 jeremycfd closed 6 years ago
2
Limited functionality of --no_probabilities

#12 jeremycfd opened 6 years ago
0
Added toggle to set all probabilities to 1 and prevent attempts to ca…

#11 jeremycfd closed 6 years ago
0
Single chain

#10 jeremycfd closed 6 years ago
0
Investigate redesigning of filename/path lengths

#9 jeremycfd opened 6 years ago
0
Change exit code to non-zero (error) in setup.py

#8 ddiez closed 6 years ago
0
Change to the default distance parameters: gap_penalty_cdr3_region go…

#7 phbradley closed 7 years ago
0
Dist refactor

#6 phbradley closed 7 years ago
0
Translated the README to markdown

#5 agartland closed 6 years ago
0
Add testing, other datasets to download file

#4 phbradley closed 7 years ago
0
Reduce and annotate the required fields in the clones file

#3 phbradley opened 7 years ago
0
Allow for missing quality strings, and also ASCII num->char formatted quality strings

#2 phbradley opened 7 years ago
0
Catch special-case failures caused by only having one epitope, subject, etc

#1 phbradley opened 7 years ago
0