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phelelani / nf-rnaSeqMetagen

Metagenomics pipeline
MIT License
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Remove scratch parameter from nextflow.config #1

Closed drejom closed 3 years ago

drejom commented 4 years ago

Setting scratch with an absolute path in the pipeline nextflow.config breaks the tutorial example:

https://github.com/phelelani/nf-rnaSeqMetagen/blob/3375836ec7ac76911e6bdb1263b43c3b9b7e0c0c/nextflow.config#L151

Should move this parameter to your personal ~/.nexflow/config

phelelani commented 3 years ago

@drejom - Thank you for making me aware of this issue. We had to add the scratch directory in the nextflow.config to overcome some issues we were having on our cluster at the time of testing. I have removed this from the code.