phenopackets / hapi-pheno

FHIR Client for working with phenopackets
http://phenopackets.org/hapi-pheno/
GNU General Public License v3.0
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UnprocessableEntityException: HTTP 422 Unprocessable Entity: Attachments have data and/or url, or else SHOULD have either contentType and/or language #20

Open pnrobinson opened 2 years ago

pnrobinson commented 2 years ago

2022-09-01 17:27:46.906 [main] ERROR o.s.boot.SpringApplication [SpringApplication.java:856] Application run failed java.lang.IllegalStateException: Failed to execute CommandLineRunner at org.springframework.boot.SpringApplication.callRunner(SpringApplication.java:807) at org.springframework.boot.SpringApplication.callRunners(SpringApplication.java:788) at org.springframework.boot.SpringApplication.run(SpringApplication.java:333) at org.springframework.boot.SpringApplication.run(SpringApplication.java:1309) at org.springframework.boot.SpringApplication.run(SpringApplication.java:1298) at org.monarchinitiative.hapiphenoclient.PhenoClientConsoleApplication.main(PhenoClientConsoleApplication.java:36) Caused by: ca.uhn.fhir.rest.server.exceptions.UnprocessableEntityException: HTTP 422 Unprocessable Entity: Attachments have data and/or url, or else SHOULD have either contentType and/or language at java.base/jdk.internal.reflect.DirectConstructorHandleAccessor.newInstance(DirectConstructorHandleAccessor.java:67)

chrisroederucdenver commented 2 years ago

Caused by: ca.uhn.fhir.rest.server.exceptions.UnprocessableEntityException: HTTP 422 Unprocessable Entity: Attachments have data and/or url, or else SHOULD have either contentType and/or language at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:77) at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) at java.base/java.lang.reflect.Constructor.newInstanceWithCaller(Constructor.java:499) at java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:480) at ca.uhn.fhir.rest.server.exceptions.BaseServerResponseException.newInstance(BaseServerResponseException.java:305) at ca.uhn.fhir.rest.client.impl.BaseClient.invokeClient(BaseClient.java:363) at ca.uhn.fhir.rest.client.impl.GenericClient$BaseClientExecutable.invoke(GenericClient.java:540) at ca.uhn.fhir.rest.client.impl.GenericClient$CreateInternal.execute(GenericClient.java:693) at ca.uhn.fhir.rest.client.impl.GenericClient$CreateInternal.execute(GenericClient.java:647) at org.monarchinitiative.hapiphenoclient.analysis.PhenopacketDemoRunner.postResource(PhenopacketDemoRunner.java:243) at org.monarchinitiative.hapiphenoclient.analysis.PhenopacketDemoRunner.postBethlemClinicalExample(PhenopacketDemoRunner.java:374) at org.monarchinitiative.hapiphenoclient.analysis.PhenopacketDemoRunner.postToFhir(PhenopacketDemoRunner.java:425) at org.monarchinitiative.hapiphenoclient.PhenoClientConsoleApplication.run(PhenoClientConsoleApplication.java:46) at org.springframework.boot.SpringApplication.callRunner(SpringApplication.java:804) ... 5 common frames omitted

chrisroederucdenver commented 2 years ago

2022-09-06 14:41:40.549 [qtp1239821079-26] DEBUG c.uhn.fhir.rest.server.RestfulServer [RestfulServer.java:1134] RestfulServer.handleRequest() got rest operation type:CREATE 2022-09-06 14:41:40.802 [qtp1239821079-26] ERROR c.uhn.fhir.rest.server.RestfulServer [RestfulServer.java:1183] RestfulServer.handleRequest() Throwable:{} ca.uhn.fhir.rest.server.exceptions.UnprocessableEntityException: Attachments have data and/or url, or else SHOULD have either contentType and/or language at ca.uhn.fhir.rest.server.interceptor.BaseValidatingInterceptor.fail(BaseValidatingInterceptor.java:125) at ca.uhn.fhir.rest.server.interceptor.BaseValidatingInterceptor.validate(BaseValidatingInterceptor.java:358) at ca.uhn.fhir.rest.server.interceptor.RequestValidatingInterceptor.incomingRequestPostProcessed(RequestValidatingInterceptor.java:76) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:568) at ca.uhn.fhir.interceptor.executor.BaseInterceptorService$HookInvoker.invoke(BaseInterceptorService.java:565) at ca.uhn.fhir.interceptor.executor.BaseInterceptorService.doCallHooks(BaseInterceptorService.java:300) at ca.uhn.fhir.interceptor.executor.BaseInterceptorService.callHooks(BaseInterceptorService.java:289) at ca.uhn.fhir.rest.server.RestfulServer.handleRequest(RestfulServer.java:1143) at ca.uhn.fhir.rest.server.RestfulServer.doPost(RestfulServer.java:423) at ca.uhn.fhir.rest.server.RestfulServer.service(RestfulServer.java:1868) at javax.servlet.http.HttpServlet.service(HttpServlet.java:790) at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:799) at org.eclipse.jetty.servlet.ServletHandler$ChainEnd.doFilter(ServletHandler.java:1626) at org.eclipse.jetty.websocket.server.WebSocketUpgradeFilter.doFilter(WebSocketUpgradeFilter.java:228) at org.eclipse.jetty.servlet.FilterHolder.doFilter(FilterHolder.java:193) at org.eclipse.jetty.servlet.ServletHandler$Chain.doFilter(ServletHandler.java:1601) at org.springframework.boot.web.servlet.support.ErrorPageFilter.doFilter(ErrorPageFilter.java:126) at org.springframework.boot.web.servlet.support.ErrorPageFilter.access$000(ErrorPageFilter.java:64) at org.springframework.boot.web.servlet.support.ErrorPageFilter$1.doFilterInternal(ErrorPageFilter.java:101) at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:119) at org.springframework.boot.web.servlet.support.ErrorPageFilter.doFilter(ErrorPageFilter.java:119) at org.eclipse.jetty.servlet.FilterHolder.doFilter(FilterHolder.java:193) at org.eclipse.jetty.servlet.ServletHandler$Chain.doFilter(ServletHandler.java:1601) at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:201) at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:119) at org.eclipse.jetty.servlet.FilterHolder.doFilter(FilterHolder.java:193) at org.eclipse.jetty.servlet.ServletHandler$Chain.doFilter(ServletHandler.java:1601) at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:548) at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143) at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:602) at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:127) at org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:235) at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:1624) at org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:233) at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1434) at org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:188) at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:501) at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:1594) at org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:186) at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1349) at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141) at org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:191) at org.eclipse.jetty.server.handler.HandlerCollection.handle(HandlerCollection.java:146) at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:127) at org.eclipse.jetty.server.Server.handle(Server.java:516) at org.eclipse.jetty.server.HttpChannel.lambda$handle$1(HttpChannel.java:388) at org.eclipse.jetty.server.HttpChannel.dispatch(HttpChannel.java:633) at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:380) at org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:277) at org.eclipse.jetty.io.AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:311) at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:105) at org.eclipse.jetty.io.ChannelEndPoint$1.run(ChannelEndPoint.java:104) at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.runTask(EatWhatYouKill.java:338) at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.doProduce(EatWhatYouKill.java:315) at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.tryProduce(EatWhatYouKill.java:173) at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.run(EatWhatYouKill.java:131) at org.eclipse.jetty.util.thread.ReservedThreadExecutor$ReservedThread.run(ReservedThreadExecutor.java:386) at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:883) at org.eclipse.jetty.util.thread.QueuedThreadPool$Runner.run(QueuedThreadPool.java:1034) at java.base/java.lang.Thread.run(Thread.java:833) 2022-09-06 14:41:40.802 [qtp1239821079-26] INFO fhirtest.access [LoggingInterceptor.java:160] ERROR - POST http://localhost:8888/fhir/Observation