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pinellolab / STREAM

STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data
http://stream.pinellolab.org
GNU Affero General Public License v3.0
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Assigning Motifs to Kmers #90

Closed sylestiel closed 4 years ago

sylestiel commented 4 years ago

Hi,

Can you suggest a way to correlate the kmer sequence to Known Motifs? I would like for it unsubjective if possible.

Thanks in advance!

lucapinello commented 4 years ago

Sure you can consider using TomTom for this task: http://meme-suite.org/meme_5.1.0/doc/tomtom.html

On Tue, Sep 29, 2020 at 10:53 AM sylestiel notifications@github.com wrote:

Hi,

Can you suggest a way to correlate the kmer sequence to Known Motifs? I would like for it unsubjective if possible.

Thanks in advance!

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sylestiel commented 4 years ago

Thank you it worked!!