climate_community_crossrealm

Analyses of the relationship between temporal turnover in species composition and temperature change across realms.

Supporting data and code for:
Warming and cooling catalyze widespread temporal turnover in biodiversity
by Malin L. Pinsky, Helmut Hillebrand, Shane A. Blowes, Jonathan M. Chase, Laura H. Antão, Myriam R. Hirt, Ulrich Brose, Michael T. Burrows, Benoit Gauzens, and Benjamin Rosenbaum

Basic repo structure

see readmes in each directory for further information

• code/: has scripts for data analysis and producing figures and tables
• data/: has data unique to this project
• dataDL/: has data downloaded from other sources. Not tracked by Git
  • bowler_atcs: Human impact data from Bowler et al. 2020. Specifically the unzipped contents of pan310071-sup-0003-Supinfo2.7z from the SOM.
  • ersst/: ERSST v5 from ftp://ftp.cdc.noaa.gov/Datasets/noaa.ersst.v5/sst.mnmean.nc
  • cruts/: CRU TS v.4.03 from http://data.ceda.ac.uk/badc/cru/data/cru_ts/cru_ts_4.03/data/cru_ts4.03.1901.2018.tmp.dat.nc
  • worldclim/: WorldClim climatology from https://worldclim.org (wc2.0_bio_30s_01.tif)
• figures/: plots produced by scripts
• output/: files produced by scripts
• temp/: temporary files created by scripts from data in data/ or dataDL/. Not tracked by Git
• logs/: log files created by scripts. Not tracked by Git