search

pirovc / ganon

ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierarchical classification, customized reporting and more
https://pirovc.github.io/ganon/
MIT License
86 stars 13 forks source link

Feature/skip genome size #254

Closed pirovc closed 1 year ago

codecov-commenter commented 1 year ago

Codecov Report

Merging #254 (eb7bbb4) into dev (af00a99) will increase coverage by 9.06%. Report is 92 commits behind head on dev. The diff coverage is 86.48%.

:exclamation: Your organization is not using the GitHub App Integration. As a result you may experience degraded service beginning May 15th. Please install the Github App Integration for your organization. Read more.

@@            Coverage Diff             @@
##              dev     #254      +/-   ##
==========================================
+ Coverage   77.66%   86.72%   +9.06%     
==========================================
  Files          22       23       +1     
  Lines        2512     3391     +879     
==========================================
+ Hits         1951     2941     +990     
+ Misses        561      450     -111
Files Changed Coverage Δ
...classify/hierarchical_interleaved_bloom_filter.hpp 0.00% <0.00%> (ø)
src/ganon-build/include/ganon-build/Config.hpp 65.07% <61.11%> (+19.62%) :arrow_up:
...c/ganon-classify/include/ganon-classify/Config.hpp 68.64% <75.29%> (+18.64%) :arrow_up:
src/ganon/tax_util.py 80.32% <80.32%> (ø)
src/ganon/config.py 79.64% <83.28%> (+1.68%) :arrow_up:
src/ganon/build_update.py 83.60% <83.61%> (+18.12%) :arrow_up:
src/ganon/classify.py 86.84% <85.29%> (-7.28%) :arrow_down:
src/ganon-classify/GanonClassify.cpp 88.88% <86.04%> (+6.06%) :arrow_up:
src/ganon/ganon.py 88.88% <88.00%> (-5.06%) :arrow_down:
src/ganon-classify/CommandLineParser.cpp 88.88% <88.23%> (+6.83%) :arrow_up:
... and 9 more

... and 2 files with indirect coverage changes

:mega: We’re building smart automated test selection to slash your CI/CD build times. Learn more