Open myrmoteras opened 1 year ago
@tcatapano here is a selection of articles in TB that have no treatments and are not taxonomic journals for which we have templates (118 articles):
and here are a sample of what we process with treatments (4 treatments, one a new species at least, including 2 tables (200 articles)
let me know, whether this is what you need
Here some additional files
Journal | Article | BLR | TB UUID | # table | # figures | # treatments | comment |
---|---|---|---|---|---|---|---|
One Health | 10.1016/j.onehlt.2023.100484 | Zenodo | 8B45FFE4FFA0037AFFC8F90EFFCEFFD7 | 1 | 4 | ||
J Parasitology | https://doi.org/10.1645/21-44 | BLR | FFC0FFC5FFEAFFC39460FF9378435F42 | 1 | 5 | 1 | j from the Swiss Institute of Tropical Medicine, interested in collaboration with us; has many articles without treatments |
Feeding json files to: curl -s [JSON URL] | jq -r '.. | .DocArticleUuid? | select(. != null)'
created two files with lists of DocArticleUuid's in metadata/
Non-taxonomic articles Taxonomic articles
@gsautter: taking these lists of UUIDs, what URL pattern can I use to get corresponding GGXML?
@gsautter Here's a link to lists of article UUIDs to get GGXML
https://github.com/plazi/ggxml2taxpub/blob/master/metadata/non-taxonomic-pubs.txt
https://github.com/plazi/ggxml2taxpub/blob/master/metadata/treatment_articles.txt
OK, thanks, where should I put these XMLs?
OK, thanks, where should I put these XMLs?
Nevermind, stored them locally and zipped them up. TaxPubTestXMLs.zip
Thanks @gsautter and @myrmoteras. The files are now in https://github.com/plazi/ggxml2taxpub/tree/master/ggxml/articles
@tcatapano here is one more, that is used in the phylogeny side as an example - https://tb.plazi.org/GgServer/summary/6A34FFD0A830C44EFFE16B1A5236B054
see also https://github.com/plazi/Plazi-Communications/issues/1271
see sample valid non-taxonomic taxpub file at: articles/non-tax/A53DAB3EFFB4EC1DFF94FFD9517DD04A_tp.xml
With treatment:
GBIF - 29faef28-cc0b-4b80-8ef8-83e530b3995e
TB - 3524B536FF87A93DFFF33658FF864174
Zenodo -
no treatments, in Zenodo
TB: https://tb.plazi.org/GgServer/summary/FFC04D222C78FD23FF94FFFEFFF7FF92
BLR: https://zenodo.org/records/10360310
Viktorov, A. G. (2023). Invasive Potential and Regulation Experience of Using Transgenic Organisms in Aquaculture by Way of Example of Atlantic Salmon. Russian Journal of Biological Invasions, 14(2), 144–150. https://doi.org/10.1134/s2075111723020145
Provide a representative sample (12-50) of articles in GGI format that serves as the basis for designing the JATS and the related XSLT