Run Eflux to obtain condition-specific fluxes based on proteomics

[mcnaughtonadm]

Progress here

Eflux has been run on the proteomics data using the notebook provided in the syn_bmca repo to replicate how we did it with the transcriptomics.

Something of note(?). At the end of that notebook (after saving the file) the following lines of code are run:

bounds = {r.name: r.dual for r in  condition_specific_models['D_T2_A'].constraints}
variables = {r.name: r.primal for r in condition_specific_models['D_T2_A'].variables if 'SLACK' in r.name}
variables
{v: x for v,x in variables.items() if (x!=0)}

Is the expected output of this an empty dict {} showing that all SLACK variables are 0 at the end?

I am getting the following:

{'SLACK_MPOMC1': 1.4546932323173177e-16}