To get to know the pipeline, I have started analyzing the same dataset using the identical singularity image. The first-level analysis is done successfully, and I can see the _zstat.nii.gz, _tstat.nii.gz, _cope.nii.gz, and _varcope.nii.gz files for my single subjects. However, when I run the group-level analysis, no process gets initiated (i.e., nothing happens on the terminal). Is this maybe b/c the group-level code in run.py is #commented (line 166 to 173). Below I paste the code I used for first-level analysis (which has worked) and the group-level analysis (which does not run):
Hi,
To get to know the pipeline, I have started analyzing the same dataset using the identical singularity image. The first-level analysis is done successfully, and I can see the _zstat.nii.gz, _tstat.nii.gz, _cope.nii.gz, and _varcope.nii.gz files for my single subjects. However, when I run the group-level analysis, no process gets initiated (i.e., nothing happens on the terminal). Is this maybe b/c the group-level code in run.py is #commented (line 166 to 173). Below I paste the code I used for first-level analysis (which has worked) and the group-level analysis (which does not run):
FIRST-LEVEL
singularity run -e /home/ds000003/analysis-0.0.3.simg \ /home/ds000003/derivatives/fmriprep-1.5.4/fmriprep \ /home/ds000003/derivatives/analysis participant \ --participant-label 01 \ --bids-dir /home/ds000003 \ --space MNI152NLin2009cAsym
GROUP-LEVEL
singularity run -e /home/ds000003/analysis-0.0.3.simg \ /home/ds000003/derivatives/fmriprep-1.5.4/fmriprep \ /home/ds000003/derivatives/analysis group \ --bids-dir /home/ds000003
Any help is very much appreciated!
Mohsen