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pombase
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pombase-chado
PomBase code for accessing Chado
MIT License
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exo5-D176A D176A invalid_error peptide sequence missing
#1188
ValWood
opened
5 months ago
4
allele name update mcm4-td
#1187
ValWood
closed
5 months ago
3
UniPathway mapping, not filtered
#1186
ValWood
closed
5 months ago
3
Comment field rules
#1185
ValWood
opened
5 months ago
12
Filter PomBase parent disease associations with PB REF:0000003
#1184
ValWood
opened
5 months ago
4
correlated_with disease list
#1183
ValWood
closed
5 months ago
6
Training datasets for ML/AI for named entity recognition
#1182
ValWood
closed
3 days ago
11
Training datasets for ML/AI - publication centric
#1181
ValWood
opened
5 months ago
7
Update PDB data file
#1180
kimrutherford
closed
5 months ago
12
Update to InterPro v100.0
#1179
kimrutherford
closed
5 months ago
1
Load failed - possible bug in OBO reading code
#1178
kimrutherford
closed
5 months ago
4
Query GO for pombe GO-CAMs
#1177
kimrutherford
closed
2 months ago
26
Metric : Total genes in GO CAM models
#1176
ValWood
closed
5 months ago
10
Attribution for pathways
#1174
ValWood
opened
6 months ago
16
Use the PRO short name in GPI file
#1173
kimrutherford
closed
6 months ago
10
Display 'binding and ' active site' from UniPRot
#1172
ValWood
closed
2 months ago
17
PTM processing from Uniprot
#1171
ValWood
closed
1 month ago
29
Add 'buried residues' track to protein viewer
#1169
ValWood
opened
6 months ago
0
malformed GO annotations
#1168
ValWood
closed
6 months ago
4
Update InterPro to v99.0
#1167
kimrutherford
closed
6 months ago
2
Load complex portal UIDs into Chado and put them in the GPAD file
#1166
ValWood
closed
6 months ago
22
Store IDs of public GO-CAMs as featureprops in Chado
#1165
kimrutherford
closed
7 months ago
3
Fix weird feature_cvtermprop source_file from GOA loading
#1164
kimrutherford
closed
7 months ago
7
Remove code for reading exogenous_promoter from Canto JSON
#1163
kimrutherford
closed
7 months ago
3
block false positive publications in gene page publication list
#1162
ValWood
opened
7 months ago
3
Find all synonym fields with spaces
#1161
ValWood
closed
7 months ago
3
600 missing annotations today - mostly protein binding
#1160
kimrutherford
closed
7 months ago
2
log file alleles not beginning with a gene name
#1159
ValWood
closed
7 months ago
4
PHAF files change gene name to "gene symbol"
#1157
ValWood
closed
7 months ago
4
Some promoters missing from Chado
#1156
kimrutherford
closed
8 months ago
2
Switch some RNA allele "other" type to nucleotide_deletion
#1155
kimrutherford
closed
8 months ago
3
Checks for phenotype data (errors picked up by Monarch)
#1154
ValWood
closed
7 months ago
15
some WT alleles have systemtic IDs when genes are named
#1153
ValWood
closed
8 months ago
4
version of GAF for annotation checking
#1152
ValWood
closed
8 months ago
6
remove a legacy data remapping
#1151
ValWood
closed
8 months ago
2
legacy annotations not visible in PomBase
#1150
ValWood
closed
8 months ago
2
Allow the loading order of IEA data to be prioritised
#1149
ValWood
closed
8 months ago
18
Add gene and PMID details from PDB to Chado
#1148
kimrutherford
closed
8 months ago
3
global fix
#1147
ValWood
closed
8 months ago
3
Include new style genotype interactions in export file for BioGRID
#1146
kimrutherford
opened
9 months ago
1
Create a new interactions file for BioGRID
#1145
kimrutherford
closed
9 months ago
0
Check for duplicate gene names when loading contig files
#1144
kimrutherford
closed
9 months ago
3
moa1-7dsr
#1143
ValWood
closed
9 months ago
2
prp10-1 allele issue
#1142
ValWood
closed
9 months ago
11
protein modification errors
#1141
ValWood
closed
8 months ago
27
GO evidence code with incorrect reference
#1140
ValWood
closed
9 months ago
2
Update InterPro to 98.0
#1139
kimrutherford
closed
9 months ago
1
annotations with column 17 in legacy GO file don't appear to parse
#1138
ValWood
closed
9 months ago
2
other species in "with field" for binding annotation
#1135
ValWood
closed
10 months ago
3
entity "Type" in GO-export files
#1134
ValWood
closed
10 months ago
1
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