Feature request: Support ANGSD format SFS

popgenmethods / momi2

Infer demographic history with the Moran model

GNU General Public License v3.0

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Feature request: Support ANGSD format SFS #34

Open biozzq opened 4 years ago

biozzq commented 4 years ago

Dear all,

I found that momi2 does not allow one to estimate demographic parameters from the (joint) site frequency spectrum (SFS) generated from ANGSD ( If I missed anything, please let me know ). If possible, can momi2 introduce some new feature such as compatibility with ANGSD?

Best regards, Zhuqing

jackkamm commented 4 years ago

It should be possible, but I probably won't be able to get to it for at least a couple months. Pull requests are welcome -- if someone is interested in implementing this, I can provide guidance re: any questions about the momi2 codebase.

taishudayo commented 1 year ago

Dear all, I'm very interested in using momi2 with sfs generated from ANGSD. Is there any progress about this issue?

Best, Taishu