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popgenome / lettuce2020

Codes for the lettuce resequencing project in 2020
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genetic map #3

Open lgbTime opened 2 years ago

lgbTime commented 2 years ago

Dear authors, thanks for present a wonderful jobs for lettuce and the github code is very clear in details. Here is my question, did your study use the genetic map to impute the genotype when perform GWAS or genome assembly ? where could I find one?

popgenome commented 2 years ago

Thank you for the question. We didn't use a genetic map in this work. Please refer to the following papers for example,

  1. Quantitative trait loci associated with seed and seedling traits in Lactuca (doi: 10.1007/s00122-005-0066-4);
  2. A high-density, integrated genetic linkage map of lettuce (Lactuca spp.) (doi: 10.1007/s00122-007-0599-9);
  3. An Ultra-High-Density, Transcript-Based, Genetic Map of Lettuce (doi: 10.1534/g3.112.004929).
lgbTime commented 2 years ago

thanks for telling me the vital information of genetic map