prabhakarlab Banksy issues

prabhakarlab / Banksy

BANKSY: spatial clustering

https://prabhakarlab.github.io/Banksy

Other

74 stars 12 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Error in RunBanksy code

#41 salasd opened 1 month ago
0
Extracting Cells IDs that were used to generate Banksy K_geom neighborhood

#40 Alwash-317 closed 1 month ago
1
Running Banksy on large Xenium Dataset

#39 Alwash-317 closed 2 weeks ago
2
Error in RunBanksy with Visium HD data

#38 meaksu closed 1 month ago
2
link to the `center = TRUE` argument

#37 vipulsinghal02 closed 3 months ago
1
Strange staggering behavior

#36 jwangbio closed 3 months ago
5
choose the right k_geom parameter

#35 rocketeer1998 closed 5 months ago
2
RunBanksy function issue

#34 mvereten closed 5 months ago
2
Visium notes

#33 vipulsinghal02 closed 4 months ago
0
RunBanksy error

#32 Jadeapple closed 5 months ago
1
Banksy on integrated samples creating sample-specific clusters

#31 rstagnit closed 6 months ago
2
prop_thres in smoothLabels

#30 cindyfang70 closed 6 months ago
2
Typo in smoothLabels documentation example

#29 cindyfang70 closed 6 months ago
2
Subclustering capability

#28 KoichiHashikawa closed 6 months ago
8
Running Banksy on Harmonized Seurat Object

#27 rstagnit closed 6 months ago
5
object 'compute.banksyMatrices' not found

#26 rstagnit closed 7 months ago
4
Multi sample analysis on seurat object

#25 alirezaah98 closed 6 months ago
2
After loading the Banksy package, an error occurs when trying to create an object using BanksyObject.

#24 yuanjiao123 closed 7 months ago
2
Double the features in BANKSY assay in seurat object

#23 alirezaah98 closed 7 months ago
1
SCT instead of log transformed

#22 bmanzato closed 6 months ago
1
There is an M parameter in RunBanksy function in the analysis code but not in the manual.

#21 yuanjiao123 closed 8 months ago
1
Error in `[.data.table`(knn_df, , abs(gcm[, to, drop = FALSE] %*% (weight * : negative length vectors are not allowed Calls: computeBanksy ... <Anonymous> -> computeHarmonics -> [ -> [.data.table

#20 WangGuixiangCoder closed 8 months ago
3
missing code in multi-sample vignette page

#19 abraham-abin13 closed 8 months ago
2
Choose the right lambda for cell clustering and cell type annotation

#18 yiwang12 closed 8 months ago
3
object compute.banksymatrics not found

#17 alirezaah98 closed 8 months ago
6
Error in value[[3L]](cond) : Not enough neighbours at k_geom

#16 williamsdrake closed 8 months ago
2
Error: No images present in this Seurat object

#15 JLiLab closed 8 months ago
10
Question about normalization

#14 Jieran-S closed 8 months ago
2
R Version Issue

#13 calebhallinan closed 10 months ago
2
Implements smoothing and parallelisation

#12 jleechung closed 1 year ago
0
ClusterBanksy throws error: "REAL() can only be applied to a 'numeric', not a 'NULL'"

#11 jleechung closed 1 year ago
2
Implementation of azimuthal Gabor filters

#10 jleechung closed 1 year ago
0
some requests

#9 huoyuying closed 1 year ago
2
About data preprocessing

#8 huoyuying closed 2 years ago
2
Warning in `RunUMAP` with multiple lambdas and pca=FALSE

#7 retogerber closed 2 years ago
2
add the nbr matrix from bank object directly to the seurat object for subsequent analysis

#6 hzongyao closed 2 years ago
1
Multi-sample integration analysis

#5 hzongyao closed 2 years ago
3
Calculate the correlation of the expression of two genes

#4 hzongyao closed 2 years ago
1
How to change a BanksyObject to seurat object ?

#3 hzongyao closed 2 years ago
2
Add examples and data blackout.

#2 jleechung closed 2 years ago
0
Update main

#1 jleechung closed 2 years ago
0