ofrei
commented
5 years ago - breaking change: new LD matrix storage and calculation, now using signed "r" instead of r2
- preliminary version of the causal mixture with annotations from Alexey Shadrin
- python port of matlab runner for cross-trait MiXeR
- cost function via 1D and 2D pdf convolution and cubature integration
- port a bunch of code from plink to calculate LD matrix, and convenient LD matrix retrieval
- support of fixed effects model: get/set causalbetavec, calc_fixed_effects_delta
- bivariate posterior delta calculation via analytical integrals