precisely bioinformatics issues

precisely / bioinformatics

0 stars 0 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Write rsId to DynamoDB

#61 aneilbaboo closed 5 years ago
0
Use new calling convention for SendEmail Lambda

#60 gcv closed 5 years ago
0
Check readlinkf function in bioinformatics script

#59 gcv closed 6 years ago
0
Test application in IE (determine minimum supported version)

#58 gcv closed 6 years ago
1
Bioinformatics upload signed URL lambda prints error message

#57 gcv closed 6 years ago
1
Investigate Beagle CPU usage

#56 gcv opened 6 years ago
11
Make a Precisely-owned Repo which contains Beagle Leash code

#55 aneilbaboo opened 6 years ago
0
CalledProcessError when trying to use convert23andMe

#54 mxscott closed 6 years ago
0
Set up SES to report bioinformatics pipeline errors to user

#53 aneilbaboo closed 6 years ago
0
Set up SES to report bioinformatics pipeline errors to user

#52 aneilbaboo closed 6 years ago
0
Setup bioinformatics repo Docker developer environment

#51 aneilbaboo closed 6 years ago
0
Orchestrate running of Docker repo on AWS ECS

#50 aneilbaboo closed 6 years ago
0
Complete 23andMe Uploader Private Beta Tasks

#49 aneilbaboo closed 6 years ago
0
Modify Dynamo uploader functionality to use S3-based upload instead

#48 aneilbaboo closed 6 years ago
0
Create Test Script which processes 10 different 23andMe files of different vintages

#47 aneilbaboo opened 6 years ago
0
Test translation of specific genotype cases for 23andMe converter

#46 aneilbaboo opened 6 years ago
2
Optimize reference genome file format for adding reference to 3rd party genotype files

#45 taltman opened 6 years ago
0
S3, fargate and SES related changes

#44 visheshd closed 6 years ago
0
Test bootstrapping Docker image from scratch, and document

#43 taltman closed 6 years ago
5
Review DynamoDB table model in web repo

#42 taltman closed 6 years ago
0
Document top-level Makefile targets in README.md

#41 taltman closed 6 years ago
0
Add ability to handle S3 URIs as input & output

#40 taltman closed 6 years ago
0
Create "push Docker image to staging" script

#39 taltman closed 6 years ago
0
Create front-end script to dispatch on input file types

#38 taltman closed 6 years ago
0
Add test of Ancestry code by shunting output to 23&Me conversion function

#37 taltman closed 6 years ago
4
Add code test of real-world Ancestry file

#36 taltman closed 6 years ago
8
Add MAMBA testing package as dependency in setup.py

#35 taltman closed 6 years ago
0
Convert file & function comments into PEP docstrings for Ancestry code

#34 taltman closed 6 years ago
0
Create python function for imputation & deliver working docker image

#33 taltman closed 6 years ago
0
Compare coverage for genes and SNPs in Elizabeth's research on both ThermoFisher PMRA (Akesogen DTC) and Illumina GSA (23andMe v5)

#32 taltman closed 6 years ago
6
Determine how to perform imputation analysis over 23andMe raw data format

#31 taltman closed 6 years ago
1
Schedule conversation with Affy Bioinformatics Specialist

#30 aneilbaboo closed 6 years ago
0
Should we add gene labels to intronic variants?

#29 taltman opened 6 years ago
1
What is ME/CFS variant coverage in 23andMe, in Affy PM?

#28 aneilbaboo closed 6 years ago
5
Make a Docker Container of the convert23AndMe functionality

#27 aneilbaboo closed 6 years ago
2
Add a test suite to convert23andMe

#26 aneilbaboo closed 6 years ago
0
Add a test suite to convert23andMe

#25 aneilbaboo closed 6 years ago
1
Need S3 bucket for storing human genome builds

#24 taltman closed 6 years ago
1
convert23andMe module doesn't support human genome version 36

#23 taltman opened 6 years ago
0
Working commit of convert23andMe Python module / script

#22 taltman closed 6 years ago
2
Build Schema mapping of VCF to Genotype userData

#21 visheshd closed 6 years ago
2
Document the Precisely VCF format

#20 taltman closed 6 years ago
1
Create Precisely VCF sample files for Vishesh

#19 aneilbaboo closed 6 years ago
3
What is the difference between Affy's DTC and Pharmacogenetics chip?

#18 aneilbaboo closed 6 years ago
3
bcftools does not support converting 23&Me indel variants into {B|V}CF format

#17 taltman closed 6 years ago
0
Fix SVN Wildtype examples

#16 aneilbaboo closed 6 years ago
1
Create Releases in repos

#15 taltman closed 6 years ago
1
Create Gene Information Service (GIS) importer

#14 aneilbaboo opened 6 years ago
0
Formalize syntax for describing extended SVN for content authors

#13 taltman closed 6 years ago
5
Need to create extended SVN pattern matcher

#12 taltman closed 6 years ago
2