Variety of bug fixes; add q-array saving for HRTEM to dev functionality

[lerandc]

Bug fixes:

• HRTEM beam ordering fix-> previously, sorting did not work for multiple FP
• Frozen Phonon random number generators changed to be spawned per thread for both 2D and 3D potential integration and now use a mersenne twister-> should be more stable and secure than the previous generator configuration
• Fix virtual datasets to point to self file instead of relative filepath to self
• Changed scheme for integrating defocus, C3, and C5 inputs into dimensionless aberration so that they are read and updated correctly

Performance change:

• Apply HRTEM aberrations in propBack propagator instead of separately on CPU

New Feature:

• Fourier space arrays are now saved automatically when running HRTEM simulations