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prody / ProDy

A Python Package for Protein Dynamics Analysis
http://prody.csb.pitt.edu
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UnboundLocalError on Pfam search #255

Closed Pavellarcrc closed 8 years ago

Pavellarcrc commented 9 years ago

Hi,

I kee receivein this error message:

@> Retrieving Pfam search results: http://pfam.xfam.org/protein/PIWI_ARCFU?output=xml @> Pfam search completed in 0.86s. @> Query 'PIWI_ARCFU' matched 1 Pfam families. @> Submitted Pfam search for sequence "PMFIVNTNVPRASVPD...".

Traceback (most recent call last): File "/home/pavellar/Documents/TestePfam.py", line 21, in matches = searchPfam(sequence) File "/usr/local/lib/python2.7/dist-packages/prody/database/pfam.py", line 81, in searchPfam xml = openURL(url, timeout=timeout).read() UnboundLocalError: local variable 'url' referenced before assignment

even when using the tutorial code from ProDy.

Someone get any idea how to solve?

shivasi commented 9 years ago

We are working on this problem and will get back to you soon.

cihankayacihan commented 8 years ago

We addressed this issue in version 1.8.