pyushkevich
commented
4 years ago I don't think you can successfully build against system ITK. ITK changes dependencies frequently. Build your own ITK (4.13.2) and then use the same flags to build greedy. Should work...
On Wed, Nov 13, 2019 at 11:46 AM Alessio notifications@github.com wrote:
I'm unable to build greedy on Fedora 31.
InsightToolkit-vtk-devel Version: 4.13.1 Cmake Version: 3.14.5
$ cmake ../greedy -DITK_DIR=/usr/lib64/cmake/InsightToolkit/
-- GREEDY Version: 1.0.1 Released Mar 21, 2019
-- GIT Info:
-- Branch : master
-- SHA : 3ed5a0dc480bf0ca3f850e6783208bae3aef570c
-- Date : 2019-10-18 05:35:03 -0400
-- Configuring done
CMake Error at CMakeLists.txt:195 (ADD_EXECUTABLE):
Target "greedy" links to target "GTest::GTest" but the target was not
found. Perhaps a find_package() call is missing for an IMPORTED target, or
an ALIAS target is missing?
[...]
Then
$ make [ 5%] Building CXX object CMakeFiles/greedyapi.dir/src/lddmm_data.cxx.o In file included from /usr/include/InsightToolkit/itkNumericTraits.h:51, from /home/user/Downloads/greedy/src/lddmm_data.h:31, from /home/user/Downloads/greedy/src/lddmm_data.cxx:27: /usr/include/vxl/vcl/vcl_limits.h:11:5: warning: #warning "This header will be removed in future versions of VXL. Use equivalent C++11 header instead. see: vxl/scripts/UseStandardHeaders.py" [-Wcpp] 11 | # warning "This header will be removed in future versions of VXL. Use equivalent C++11 header instead. see: vxl/scripts/UseStandardHeaders.py" | ^
~~ /home/user/Downloads/greedy/src/lddmm_data.cxx: In instantiation of ‘static void LDDMMData<TFloat, VDim>::img_downsample(LDDMMData<TFloat, VDim>::ImageType, LDDMMData<TFloat, VDim>::ImageType, double) [with TFloat = float; unsigned int VDim = 2; LDDMMData<TFloat, VDim>::ImageType = itk::Image<float, 2>]’: /home/user/Downloads/greedy/src/lddmm_data.cxx:2008:16: required from here /home/user/Downloads/greedy/src/lddmm_data.cxx:1622:37: error: ‘vcl_ceil’ was not declared in this scope 1622 | sz[i] = (unsigned long) vcl_ceil(src->GetBufferedRegion().GetSize()[i] / factor); |~~^~~~~~~~~~/home/user/Downloads/greedy/src/lddmm_data.cxx: In instantiation of ‘static void LDDMMData<TFloat, VDim>::img_downsample(LDDMMData<TFloat, VDim>::ImageType, LDDMMData<TFloat, VDim>::ImageType, double) [with TFloat = float; unsigned int VDim = 3; LDDMMData<TFloat, VDim>::ImageType = itk::Image<float, 3>]’: /home/user/Downloads/greedy/src/lddmm_data.cxx:2009:16: required from here /home/user/Downloads/greedy/src/lddmm_data.cxx:1622:37: error: ‘vcl_ceil’ was not declared in this scope [...]— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/pyushkevich/greedy/issues/14?email_source=notifications&email_token=AAJPEW4BHCZX426X4BNOIZLQTQVM7A5CNFSM4JM6F6DKYY3PNVWWK3TUL52HS4DFUVEXG43VMWVGG33NNVSW45C7NFSM4HZCKHLQ, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAJPEW2BAXIEC3ZJRANB33LQTQVM7ANCNFSM4JM6F6DA .
-- Paul A. Yushkevich, Ph.D. Associate Professor Penn Image Computing and Science Laboratory Department of Radiology University of Pennsylvania
alcir
I'm unable to build greedy on Fedora 31.
InsightToolkit-vtk-devel Version: 4.13.1 Cmake Version: 3.14.5
Then
$ make [ 5%] Building CXX object CMakeFiles/greedyapi.dir/src/lddmm_data.cxx.o In file included from /usr/include/InsightToolkit/itkNumericTraits.h:51, from /home/user/Downloads/greedy/src/lddmm_data.h:31, from /home/user/Downloads/greedy/src/lddmm_data.cxx:27: /usr/include/vxl/vcl/vcl_limits.h:11:5: warning: #warning "This header will be removed in future versions of VXL. Use equivalent C++11 header instead. see: vxl/scripts/UseStandardHeaders.py" [-Wcpp] 11 | # warning "This header will be removed in future versions of VXL. Use equivalent C++11 header instead. see: vxl/scripts/UseStandardHeaders.py" | ^~~~~~~ /home/user/Downloads/greedy/src/lddmm_data.cxx: In instantiation of ‘static void LDDMMData::img_downsample(LDDMMData::ImageType*, LDDMMData::ImageType*, double) [with TFloat = float; unsigned int VDim = 2; LDDMMData::ImageType = itk::Image]’:
/home/user/Downloads/greedy/src/lddmm_data.cxx:2008:16: required from here
/home/user/Downloads/greedy/src/lddmm_data.cxx:1622:37: error: ‘vcl_ceil’ was not declared in this scope
1622 | sz[i] = (unsigned long) vcl_ceil(src->GetBufferedRegion().GetSize()[i] / factor);
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/user/Downloads/greedy/src/lddmm_data.cxx: In instantiation of ‘static void LDDMMData::img_downsample(LDDMMData::ImageType*, LDDMMData::ImageType*, double) [with TFloat = float; unsigned int VDim = 3; LDDMMData::ImageType = itk::Image]’:
/home/user/Downloads/greedy/src/lddmm_data.cxx:2009:16: required from here
/home/user/Downloads/greedy/src/lddmm_data.cxx:1622:37: error: ‘vcl_ceil’ was not declared in this scope
[...]