search

qasimyu / simuscop

a novel next-generation sequencing simulator using position and genomic contexts based error profiles
GNU General Public License v3.0
12 stars 4 forks source link

SimuReads writes to root directory #14

Open jberg1999 opened 2 years ago

jberg1999 commented 2 years ago

Hi,

Thanks for producing this package, it does a great job of generating WES reads! However, when I run simuReads with more than one population, the program outputs the files to the root directory instead of the output directory that I have specified. This issue should be easy to replicate as it occurs when running the config_test_tumor.txt file that is provided. I have tried different configurations and both absolute and local file paths for the output directory, and nothing seems to fix this issue. I am running the program on google cloud.

shubhambasu commented 1 year ago

make sure to install the tool and not use the one already provided. Follow installation instructions for a fresh install and it will work.