I am trying to run through the JUM pipeline comparing aligned sequencing data from 2 conditions each with 4 replicates.
I got as far as running R_script_JUM.R but then I encountered a problem. The error message was:
Error in .Call2("solve_user_SEW0", start, end, width, PACKAGE = "IRanges") :
solving row 3717: range cannot be determined from the supplied arguments (too many NAs)
Looking into it a bit further it seems the error is caused by some rows in the combined_AS_JUM.gff file not having both start and end genomic coordinates. Do you have any suggestions as I can't work out where the issue is coming from? Thanks.
I am trying to run through the JUM pipeline comparing aligned sequencing data from 2 conditions each with 4 replicates.
I got as far as running R_script_JUM.R but then I encountered a problem. The error message was:
Error in .Call2("solve_user_SEW0", start, end, width, PACKAGE = "IRanges") : solving row 3717: range cannot be determined from the supplied arguments (too many NAs)
Looking into it a bit further it seems the error is caused by some rows in the combined_AS_JUM.gff file not having both start and end genomic coordinates. Do you have any suggestions as I can't work out where the issue is coming from? Thanks.