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Cannot open tree with labelled nodes/branches #193

Open imogen-foote opened 1 year ago

imogen-foote commented 1 year ago

I have constructed a ML in R and saved the output as .phy. When I try to open this file in FigTree I get the following message saying the node/branches of the tree are labelled and asking me to select a name for these values. No matter what I enter in this box when I click 'OK' the box disappears but the tree does not open. image

I have also tried saving the output as .tre but have the same issue. Previous NJ trees I have made in R and saved as .phy open in FigTree with no issues.

Thanks

liamxg commented 1 year ago

do you do bootstrap? @imogen-foote

imogen-foote commented 1 year ago

Yes I did bootstrap

liamxg commented 1 year ago

@imogen-foote do you handle it now?

imogen-foote commented 1 year ago

@liamxg no it's still not working.

zoe-elizz commented 1 year ago

Hi Imogen, you may have solved this issue already but I was under the impression only nexus or newick format files are supported by figtree (obviously not if you have been able to import .phy files before) but maybe try one of those formats, i.e nexus or newick, if you can??

liamxg commented 1 year ago

@zoe-elizz agree.