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raphael-group
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decifer
DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell fractions (DCF).
BSD 3-Clause "New" or "Revised" License
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generatestatetree usage
#30
Subhayan18
closed
4 months ago
6
vcf_2_decifer generating empty files
#29
ElizabethBorden
closed
8 months ago
1
generatestatetrees explaination
#28
mdiaz09
closed
4 months ago
1
input file format
#27
gbnci
opened
1 year ago
0
create_input.ipynb fails to generate input file
#26
gbnci
closed
1 year ago
3
remove erroneous sysexit, handle exception with low-purity samples
#25
katelynmullen
closed
1 year ago
0
Including Indels in analysis
#24
amootta
opened
1 year ago
0
fixed error in CI calculation, bumped version
#23
brian-arnold
closed
2 years ago
0
Error message from compute_pdfs()
#22
lbresadola
opened
2 years ago
4
"Skipping mutation" warning still there with new state trees file
#21
lbresadola
closed
2 years ago
5
Interpreting DeCiFer output for downstream analysis
#20
Inceid
opened
2 years ago
9
Dev2
#19
brian-arnold
closed
2 years ago
0
The two generatestatetrees commands
#18
ybta2957e
opened
2 years ago
2
The conda command of Automatic installation
#17
ybta2957e
closed
2 years ago
1
Dev2
#16
brian-arnold
closed
2 years ago
1
Question regrading CNAs
#15
maxanes
closed
2 years ago
1
Merging VCFs
#14
ardydavari
opened
2 years ago
2
Question
#13
maxanes
closed
2 years ago
3
Dev2
#12
brian-arnold
closed
2 years ago
1
Dev2
#11
brian-arnold
closed
2 years ago
0
Dev
#10
brian-arnold
closed
2 years ago
0
updated vcf script to combine identical CN states
#9
brian-arnold
closed
2 years ago
0
merging development from personal fork
#8
brian-arnold
closed
3 years ago
0
Skipping mutations warning and list index out if range error
#7
firatuyulur
opened
3 years ago
2
Generate state trees
#6
zlin77
closed
3 years ago
1
Links to "Manual" not working
#5
mkinnaman
opened
3 years ago
0
State Tree Question
#4
mkinnaman
closed
3 years ago
3
create input issue
#3
mkinnaman
closed
3 years ago
3
User scenario
#2
shwong-tw
closed
3 years ago
2
debugged create_input.ipynb
#1
brian-arnold
closed
3 years ago
0