dantegd
commented
1 year ago Thanks for the issue report @Shraban123, we'll try to reproduce and debug and will report back status of things, any additional information could be helpful though. In particular, what type of object contained the matrix? Was it a cupy or numpy or cudf or pandas object?
Describe the bug I have found that the library freezes when the entire martix has 0s and has a size more than 4*4.
Steps/Code to reproduce bug
Expected behavior There will an error warning as such: [W] # of Nearest Neighbors should be at least 3 * perplexity. [W] [20:04:31.883513] Perplexity should be within ranges (5, 50). Your results might be a bit strange...
Environment details (please complete the following information):
packages in environment at /home/anaconda3/envs/rapids-23.06:
#
Name Version Build Channel
_libgcc_mutex 0.1 conda_forge conda-forge _openmp_mutex 4.5 2_gnu conda-forge aiohttp 3.8.4 py310h2372a71_1 conda-forge aiosignal 1.3.1 pyhd8ed1ab_0 conda-forge anyio 3.7.0 pyhd8ed1ab_1 conda-forge aom 3.5.0 h27087fc_0 conda-forge appdirs 1.4.4 pyh9f0ad1d_0 conda-forge argon2-cffi 21.3.0 pyhd8ed1ab_0 conda-forge argon2-cffi-bindings 21.2.0 py310h5764c6d_3 conda-forge arrow 1.2.3 pypi_0 pypi asttokens 2.2.1 pyhd8ed1ab_0 conda-forge async-timeout 4.0.2 pyhd8ed1ab_0 conda-forge attrs 23.1.0 pyh71513ae_1 conda-forge aws-c-auth 0.6.28 hccec9ca_5 conda-forge aws-c-cal 0.5.27 hf85dbcb_0 conda-forge aws-c-common 0.8.20 hd590300_0 conda-forge aws-c-compression 0.2.17 h4b87b72_0 conda-forge aws-c-event-stream 0.3.0 hc5de78f_6 conda-forge aws-c-http 0.7.8 h412fb1b_4 conda-forge aws-c-io 0.13.26 h0d05201_0 conda-forge aws-c-mqtt 0.8.13 ha5d9b87_2 conda-forge aws-c-s3 0.3.4 h95e21fb_5 conda-forge aws-c-sdkutils 0.1.10 h4b87b72_0 conda-forge aws-checksums 0.1.16 h4b87b72_0 conda-forge aws-crt-cpp 0.20.2 h5289e1f_9 conda-forge aws-sdk-cpp 1.10.57 h8101662_14 conda-forge backcall 0.2.0 pyh9f0ad1d_0 conda-forge backports 1.0 pyhd8ed1ab_3 conda-forge backports.functools_lru_cache 1.6.4 pyhd8ed1ab_0 conda-forge beautifulsoup4 4.12.2 pyha770c72_0 conda-forge blas 1.0 mkl
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cachetools 5.3.0 pyhd8ed1ab_0 conda-forge cairo 1.16.0 ha61ee94_1014 conda-forge certifi 2023.5.7 py310h06a4308_0
cffi 1.15.1 py310h255011f_3 conda-forge cfitsio 4.2.0 hd9d235c_0 conda-forge charls 2.4.2 h59595ed_0 conda-forge charset-normalizer 3.1.0 pyhd8ed1ab_0 conda-forge click 8.1.3 unix_pyhd8ed1ab_2 conda-forge click-plugins 1.1.1 py_0 conda-forge cligj 0.7.2 pyhd8ed1ab_1 conda-forge cloudpickle 2.2.1 pyhd8ed1ab_0 conda-forge colorama 0.4.6 pyhd8ed1ab_0 conda-forge colorcet 3.0.1 pyhd8ed1ab_0 conda-forge comm 0.1.3 pyhd8ed1ab_0 conda-forge contourpy 1.1.0 py310hd41b1e2_0 conda-forge cryptography 41.0.1 py310h75e40e8_0 conda-forge cubinlinker 0.3.0 py310hfdf336d_0 rapidsai cucim 23.06.00 cuda11_py310_230607_gfdc657b_0 rapidsai cuda-cudart 11.8.89 0 nvidia cuda-cupti 11.8.87 0 nvidia cuda-libraries 11.8.0 0 nvidia cuda-nvrtc 11.8.89 0 nvidia cuda-nvtx 11.8.86 0 nvidia cuda-profiler-api 11.8.86 0 nvidia cuda-python 11.8.2 py310h01a121a_0 conda-forge cuda-runtime 11.8.0 0 nvidia cuda-version 11.8 h70ddcb2_2 conda-forge cudatoolkit 11.8.0 h37601d7_11 conda-forge cudf 23.06.00 cuda11_py310_230607_gf881d40c63_0 rapidsai cudf_kafka 23.06.00 py310_230607_gf881d40c63_0 rapidsai cugraph 23.06.02 cuda11_py310_230613_gdb9d3c12_0 rapidsai cuml 23.06.00 cuda11_py310_230607_ga381e03f2_0 rapidsai cupy 12.0.0 py310h9216885_4 conda-forge curl 8.1.2 h409715c_0 conda-forge cusignal 23.06.00 py39_230607_g22c7120_0 rapidsai cuspatial 23.06.00 py310_230607_g7b3284af_0 rapidsai custreamz 23.06.00 py310_230607_gf881d40c63_0 rapidsai cuxfilter 23.06.00 py310_230607_g862c7d1_0 rapidsai cycler 0.11.0 pyhd8ed1ab_0 conda-forge cyrus-sasl 2.1.27 h9033bb2_6 conda-forge cytoolz 0.12.0 py310h5764c6d_1 conda-forge dask 2023.3.2 pyhd8ed1ab_0 conda-forge dask-core 2023.3.2 pyhd8ed1ab_0 conda-forge dask-cuda 23.06.00 py310_230607_gfd3ab2d_0 rapidsai dask-cudf 23.06.00 cuda11_py310_230607_gf881d40c63_0 rapidsai datashader 0.15.0 pyhd8ed1ab_0 conda-forge datashape 0.5.4 py_1 conda-forge dav1d 1.2.1 hd590300_0 conda-forge debugpy 1.6.7 py310heca2aa9_0 conda-forge decorator 5.1.1 pyhd8ed1ab_0 conda-forge defusedxml 0.7.1 pyhd8ed1ab_0 conda-forge distributed 2023.3.2.1 pyhd8ed1ab_0 conda-forge dlpack 0.5 h9c3ff4c_0 conda-forge entrypoints 0.4 pyhd8ed1ab_0 conda-forge exceptiongroup 1.1.1 pyhd8ed1ab_0 conda-forge executing 1.2.0 pyhd8ed1ab_0 conda-forge expat 2.5.0 hcb278e6_1 conda-forge fastrlock 0.8 py310hd8f1fbe_3 conda-forge ffmpeg 4.3 hf484d3e_0 pytorch filelock 3.9.0 py310h06a4308_0
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gmpy2 2.1.2 py310heeb90bb_0
gnutls 3.6.15 he1e5248_0
gtest 1.13.0 h00ab1b0_1 conda-forge hdf4 4.2.15 h9772cbc_5 conda-forge hdf5 1.12.2 nompi_h4df4325_101 conda-forge holoviews 1.15.4 pyhd8ed1ab_0 conda-forge icu 70.1 h27087fc_0 conda-forge idna 3.4 pyhd8ed1ab_0 conda-forge imagecodecs 2023.1.23 py310ha3ed6a1_0 conda-forge imageio 2.31.1 pyh24c5eb1_0 conda-forge importlib-metadata 6.7.0 pyha770c72_0 conda-forge importlib_metadata 6.7.0 hd8ed1ab_0 conda-forge importlib_resources 5.12.0 pyhd8ed1ab_0 conda-forge intel-openmp 2023.1.0 hdb19cb5_46305
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nvtx 0.2.5 py310h1fa729e_0 conda-forge openh264 2.1.1 h4ff587b_0
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seaborn 0.12.2 pypi_0 pypi send2trash 1.8.2 pyh41d4057_0 conda-forge setuptools 67.7.2 pyhd8ed1ab_0 conda-forge shapely 2.0.1 py310h8b84c32_0 conda-forge simpervisor 1.0.0 pyhd8ed1ab_0 conda-forge six 1.16.0 pyh6c4a22f_0 conda-forge snappy 1.1.10 h9fff704_0 conda-forge sniffio 1.3.0 pyhd8ed1ab_0 conda-forge sortedcontainers 2.4.0 pyhd8ed1ab_0 conda-forge soupsieve 2.3.2.post1 pyhd8ed1ab_0 conda-forge spdlog 1.11.0 h9b3ece8_1 conda-forge sqlite 3.42.0 h2c6b66d_0 conda-forge stack_data 0.6.2 pyhd8ed1ab_0 conda-forge streamz 0.6.4 pyh6c4a22f_0 conda-forge sympy 1.11.1 py310h06a4308_0
tbb 2021.8.0 hdb19cb5_0
tblib 1.7.0 pyhd8ed1ab_0 conda-forge terminado 0.17.1 pyh41d4057_0 conda-forge threadpoolctl 3.1.0 pyh8a188c0_0 conda-forge tifffile 2023.4.12 pyhd8ed1ab_0 conda-forge tiledb 2.13.2 hd532e3d_0 conda-forge tinycss2 1.2.1 pyhd8ed1ab_0 conda-forge tk 8.6.12 h27826a3_0 conda-forge toolz 0.12.0 pyhd8ed1ab_0 conda-forge torchaudio 2.0.2 py310_cu118 pytorch torchtriton 2.0.0 py310 pytorch torchvision 0.15.2 py310_cu118 pytorch tornado 6.3.2 py310h2372a71_0 conda-forge tqdm 4.65.0 pyhd8ed1ab_1 conda-forge traitlets 5.9.0 pyhd8ed1ab_0 conda-forge treelite 3.2.0 py310h1be96d9_0 conda-forge treelite-runtime 3.2.0 pypi_0 pypi typing-extensions 4.6.3 hd8ed1ab_0 conda-forge typing_extensions 4.6.3 pyha770c72_0 conda-forge typing_utils 0.1.0 pyhd8ed1ab_0 conda-forge tzcode 2023c h0b41bf4_0 conda-forge tzdata 2023c h71feb2d_0 conda-forge ucx 1.14.1 h4a2ce2d_2 conda-forge ucx-proc 1.0.0 gpu rapidsai ucx-py 0.32.00 py310_230607_gded9ea2_0 rapidsai unicodedata2 15.0.0 py310h5764c6d_0 conda-forge uri-template 1.3.0 pypi_0 pypi urllib3 1.26.15 pyhd8ed1ab_0 conda-forge wcwidth 0.2.6 pyhd8ed1ab_0 conda-forge webcolors 1.13 pypi_0 pypi webencodings 0.5.1 py_1 conda-forge websocket-client 1.6.0 pyhd8ed1ab_0 conda-forge websockets 10.4 py310h5764c6d_1 conda-forge wheel 0.40.0 pyhd8ed1ab_0 conda-forge widgetsnbextension 4.0.7 pyhd8ed1ab_0 conda-forge xarray 2023.5.0 pyhd8ed1ab_0 conda-forge xerces-c 3.2.4 h55805fa_1 conda-forge xgboost 1.7.5dev.rapidsai23.06 cuda11_py310_0 rapidsai xorg-kbproto 1.0.7 h7f98852_1002 conda-forge xorg-libice 1.1.1 hd590300_0 conda-forge xorg-libsm 1.2.4 h7391055_0 conda-forge xorg-libx11 1.8.4 h0b41bf4_0 conda-forge xorg-libxau 1.0.11 hd590300_0 conda-forge xorg-libxdmcp 1.1.3 h7f98852_0 conda-forge xorg-libxext 1.3.4 h0b41bf4_2 conda-forge xorg-libxrender 0.9.10 h7f98852_1003 conda-forge xorg-renderproto 0.11.1 h7f98852_1002 conda-forge xorg-xextproto 7.3.0 h0b41bf4_1003 conda-forge xorg-xproto 7.0.31 h7f98852_1007 conda-forge xyzservices 2023.5.0 pyhd8ed1ab_1 conda-forge xz 5.2.6 h166bdaf_0 conda-forge yaml 0.2.5 h7f98852_2 conda-forge yarl 1.9.2 py310h2372a71_0 conda-forge zeromq 4.3.4 h9c3ff4c_1 conda-forge zfp 1.0.0 h27087fc_3 conda-forge zict 3.0.0 pyhd8ed1ab_0 conda-forge zipp 3.15.0 pyhd8ed1ab_0 conda-forge zlib 1.2.13 hd590300_5 conda-forge zlib-ng 2.0.7 h0b41bf4_0 conda-forge zstd 1.5.2 h3eb15da_6 conda-forge
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